View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_4 (Length: 417)
Name: NF21498_low_4
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 100 - 401
Target Start/End: Original strand, 25743864 - 25744165
Alignment:
| Q |
100 |
caatcatcatcacacagttctgaaagataattaggctcaacagtctgcataattgatgccacatgagcaattcttgttgttacaataatcttacttccag |
199 |
Q |
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| T |
25743864 |
caatcatcatcacaaagttctgaaagataataaggctcaacagtctgcataattgatgccacgtgagcaattcttgttgttacaataatcttacttccag |
25743963 |
T |
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| Q |
200 |
gagcaccatacacaaatggattcttcaaagtttcccggcttatgcagttttgattccatacatcatctaaaatgaataaaaagtttttctttaacaacct |
299 |
Q |
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| T |
25743964 |
gagcaccatacacaaatggattcttcaaagtttcccagcttatgtagttttgattccatacatcatctaaaatgaataaaaactttttctttaacaacct |
25744063 |
T |
|
| Q |
300 |
tttcttcaaatcatgctagagtaaattcagctcttcaatactgcaactacatgaagtgatatcttccacaagggtttttgtaatcttgagaacatcaaac |
399 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
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| T |
25744064 |
tttcttcaaatcatgctggagtaaattcaacttttcaatactgcaactacatgaagtgatctcttccacaagggtttttgtaatcttgaaaatatcaaac |
25744163 |
T |
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| Q |
400 |
tg |
401 |
Q |
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|| |
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| T |
25744164 |
tg |
25744165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 25743662 - 25743762
Alignment:
| Q |
4 |
ctgcaaatcccatatctcactgtttagtactttgtaccattcccttgtatcatctttagatctcagaagtcctgcaagtgtcttcacagccgatggcaat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| | |||||| |
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| T |
25743662 |
ctgcaaatcccatatctcactgtttagtactttgtaccattcccttgtatcatctttacatctcagaagtcccgcaagtgtcttcacggccaaaggcaat |
25743761 |
T |
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| Q |
104 |
c |
104 |
Q |
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| T |
25743762 |
c |
25743762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 18085752 - 18085658
Alignment:
| Q |
10 |
atcccatatctcactgtttagtactttgtaccattcccttgtatcatctttagatctcagaagtcctgcaagtgtcttcacagccgatggcaatc |
104 |
Q |
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|||||||||||||||||| |||||||| | |||||| ||||| ||| ||||||| |||||||||||||||||||| |||| | ||||||| |
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| T |
18085752 |
atcccatatctcactgttcagtactttatgccattcttgaatatcactttttgatctcaaaagtcctgcaagtgtcttcaaagccaaaggcaatc |
18085658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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