View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_6 (Length: 357)
Name: NF21498_low_6
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 8518688 - 8518628
Alignment:
| Q |
1 |
atcaaaccaatcagttaggaagaaaaaattaaaccaaccaatgagctatagaaaagtcata |
61 |
Q |
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| T |
8518688 |
atcaaaccaatcagttaggaagaaaaaattaaacgaaccaatgagctgtagaaaagtcata |
8518628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 8529951 - 8529821
Alignment:
| Q |
199 |
tttttcattcattacagttctattcgacttgatatattagtctttgtaattgcatgtagagaaaattcggtttatacacataaaaataaaaataatattg |
298 |
Q |
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| T |
8529951 |
tttttaattcattacggttctatccgattcgagatattagtatttacagttgcatgcagaggaaattcagtttacacacataaaaatga------tattg |
8529858 |
T |
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| Q |
299 |
taatgttgaaagacttgaaacagtcatcataacgtaa |
335 |
Q |
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| T |
8529857 |
taatgtcgaaagactctaaacagtcatcataacgtaa |
8529821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 8530189 - 8530132
Alignment:
| Q |
4 |
aaaccaatcagttaggaagaaaaaattaaaccaaccaatgagctatagaaaagtcata |
61 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||| |
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| T |
8530189 |
aaaccaatcagttaggaaaaataaattaaaccaaccaatgagcaatagtaaagtcata |
8530132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 8518608 - 8518511
Alignment:
| Q |
52 |
aaaagtcatagggcaatgtggatgtacaacaacaatttttaggtaatgtaaccttgaaagctcaattgg-aaagtcattataatgtagatgacttacaaa |
150 |
Q |
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| T |
8518608 |
aaaactcataagtcaatgtggatgtacaaccacaatttttagccaaaataatcttgaaag---agttggaaaagtcattataatgtagatgatttagaaa |
8518512 |
T |
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