View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_8 (Length: 235)
Name: NF21498_low_8
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 7544550 - 7544747
Alignment:
| Q |
23 |
aagtaatttggcgctttggcagtttatgagaccccttaattcaatattgaagctatatgctgctggcttgctccttgttagctgtaatttgaggtcaaga |
122 |
Q |
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| T |
7544550 |
aagtaatttggcactttggcagtttatgagaccccttaattcaatattgcggctctatgctgcggggttgctccttgttaactgtaatttgaggtcaaga |
7544649 |
T |
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| Q |
123 |
gctgaagatcttgtatcccctggcattgcgaaatttgaatgtttgctgggagctttacttgaaaataagaaaatactacaaagttcaccacctttgct |
220 |
Q |
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| T |
7544650 |
gccgaagatcttgtatccccgggcattgtgaaatttgaatgtttgttgggagctttacttgaaaataagaaaatactacaaagttcaccacctttgct |
7544747 |
T |
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Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 1126503 - 1126691
Alignment:
| Q |
26 |
taatttggcgctttggcagtttatgagaccccttaattcaatattgaagctatatgctgctggcttgctccttgttagctgtaatttgaggtcaagagct |
125 |
Q |
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| T |
1126503 |
taatttggcactttggcagtttat------ccttaattcaatattgaggctctacgctgctggtttggtcgttgttagctgtaatttgagggcaagagct |
1126596 |
T |
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| Q |
126 |
gaagatcttgtatcccctggcattgcgaaatttgaatgtttgctgggagctttacttgaaaataagaaaatactacaaagttcaccacctttgct |
220 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
1126597 |
gaagatcttgtatcccctggcactgcaaaatttgaatgtttgctgggagttttacttgaaaatatgaaaatacttcagagttcaccacctttgct |
1126691 |
T |
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