View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21498_low_9 (Length: 205)
Name: NF21498_low_9
Description: NF21498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21498_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 21470276 - 21470449
Alignment:
| Q |
16 |
tatcaacataatttgtgtcataatatattttctaaaatatctgcaaattcaataaggagaaaagcaacaatcacatagatcatatgattttaccgtgcca |
115 |
Q |
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| T |
21470276 |
tatcaacataatttgtgtcataatatattttctaaaatatctgcaaattcaataaggagaaaagcaacaatcacatagatcatatgattttaccgtgcca |
21470375 |
T |
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| Q |
116 |
gtatatagtaattaagttttttca-ttttgtagcatttggaactaactttttctcatttgtccaaagctactag |
188 |
Q |
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| T |
21470376 |
gtatatagtaattaagttttttcatttttgtagcatttggaactaactttttctcatttgtccaaagctactag |
21470449 |
T |
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Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 21500177 - 21500340
Alignment:
| Q |
30 |
gtgtcataatat-attttctaaaatatctgcaaattcaataaggagaaaagcaacaatcacatagatcatatgattttaccgtgccagtatatag-taat |
127 |
Q |
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| T |
21500177 |
gtgtcataatattattttgtaaagtatctccaaattctataaggagaaaagcaacaatcacattgatcatatgattttatcgtgttagtatatagttatt |
21500276 |
T |
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| Q |
128 |
taagttttttcattttgtagcatttggaactaac---tttttctcatttgtccaaagctactag |
188 |
Q |
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| T |
21500277 |
taattctttttgttttgtagcatttggaactcacttttttttctcatttgtccgaagctactag |
21500340 |
T |
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