View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21499_low_2 (Length: 437)
Name: NF21499_low_2
Description: NF21499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21499_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 43832084 - 43831663
Alignment:
| Q |
17 |
cataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctctttcaaacaccacactgttacgcaagtgctt |
116 |
Q |
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| T |
43832084 |
cataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctctttcaatcaccacactgttacgcaagtgctt |
43831985 |
T |
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| Q |
117 |
agatagttagatcataaa-gtataggataaaccgatttaagctctttgaaatgtgcttaaagtgcattggtcaatctgctatttggctgtgagccacaag |
215 |
Q |
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| T |
43831984 |
agatagttagatcataaaagtataggataaaccgatttaagctctttgaaatgtgcttaaagtgcattggtcaatctgctatttggctgtgagccacaag |
43831885 |
T |
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| Q |
216 |
aatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaagtgatagcaaaacagcagatgtctaatat |
315 |
Q |
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| T |
43831884 |
aatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaagtgatagcaaaacagcagatgtctaatat |
43831785 |
T |
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| Q |
316 |
ttccaacctaaaaaacctgacactaaattattggattagcactaattactctatgaagaggatatgagtagcatttgaactttgaagtgctttcctacat |
415 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43831784 |
tttcaacctaaaaaacctgacactaaattattggattagcactaattactctatgaagaggatatgagtagcatttgaactttgaagtgctttcctacat |
43831685 |
T |
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| Q |
416 |
tagttaatattcttcgacatcc |
437 |
Q |
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| T |
43831684 |
tagttaatttttctcgacatcc |
43831663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 43826883 - 43826784
Alignment:
| Q |
18 |
ataagttgttcaaagaaaaatttcacataaccgctacataaacgtttatgcttttatatcataagctctttcaaacaccacactgttacgcaagtgctta |
117 |
Q |
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| T |
43826883 |
ataagttgttcgaagaaaaatttcacataacctctacatttacgtttattc-ttgataccataagctctttcaagca-cac-ctgttacacaagtgttta |
43826787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 43826712 - 43826603
Alignment:
| Q |
197 |
tttggctgtgagccacaagaatacatgaaatgcaaaatacacaatcactctaaaaatgtgcatgctacttgtacgaccaagactgaacaagtgatagcaa |
296 |
Q |
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|||||||||| |||| ||||||| ||||||| ||||| ||| |||||||||||| || || |||||||||||||||||||| || | ||| |||||| |
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| T |
43826712 |
tttggctgtgggccataagaatatatgaaat-caaaaaacagctgcactctaaaaatatgtatactacttgtacgaccaagacttaaaacgtgctagcaa |
43826614 |
T |
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| Q |
297 |
aacagcagatg |
307 |
Q |
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|| | |||||| |
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| T |
43826613 |
aataacagatg |
43826603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43833381 - 43833317
Alignment:
| Q |
25 |
gttcaaagaaaaatttcacataaccgc-tacataaacgtttatgcttttatatcataagctctttc |
89 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||| | ||| ||| |||||||||||| |
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| T |
43833381 |
gttcaaagaaaaatttcacataacctcttgcataaacgtttatac-tttgtattataagctctttc |
43833317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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