View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21499_low_4 (Length: 371)

Name: NF21499_low_4
Description: NF21499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21499_low_4
NF21499_low_4
[»] chr2 (18 HSPs)
chr2 (18-177)||(45342338-45342497)
chr2 (240-291)||(45342224-45342275)
chr2 (291-356)||(29224449-29224515)
chr2 (291-356)||(29337748-29337814)
chr2 (301-356)||(8679167-8679222)
chr2 (291-354)||(36039624-36039687)
chr2 (291-356)||(42700336-42700401)
chr2 (301-356)||(31759013-31759068)
chr2 (301-347)||(28006828-28006874)
chr2 (301-347)||(43992256-43992302)
chr2 (301-354)||(13229714-13229767)
chr2 (301-356)||(14701379-14701434)
chr2 (301-356)||(28457249-28457304)
chr2 (301-356)||(36556934-36556989)
chr2 (311-356)||(9783654-9783699)
chr2 (311-347)||(23924414-23924450)
chr2 (301-340)||(27258135-27258174)
chr2 (301-347)||(24662499-24662545)
[»] chr8 (13 HSPs)
chr8 (289-356)||(9067527-9067594)
chr8 (290-356)||(11308348-11308414)
chr8 (291-356)||(8742645-8742710)
chr8 (291-356)||(41576693-41576758)
chr8 (291-356)||(3299536-3299601)
chr8 (291-356)||(27348761-27348826)
chr8 (291-356)||(34006135-34006200)
chr8 (291-354)||(16583113-16583177)
chr8 (291-356)||(22181311-22181376)
chr8 (301-356)||(28925514-28925570)
chr8 (290-352)||(28370832-28370895)
chr8 (311-356)||(16959286-16959331)
chr8 (301-356)||(13848699-13848754)
[»] chr3 (18 HSPs)
chr3 (289-356)||(9990130-9990197)
chr3 (291-354)||(52307447-52307510)
chr3 (291-356)||(7652584-7652649)
chr3 (290-356)||(10385430-10385497)
chr3 (291-356)||(8626358-8626424)
chr3 (291-356)||(23383039-23383105)
chr3 (290-356)||(22098715-22098781)
chr3 (291-356)||(23397030-23397096)
chr3 (291-347)||(20962620-20962676)
chr3 (291-355)||(27849913-27849977)
chr3 (301-356)||(37023425-37023480)
chr3 (291-347)||(11257847-11257903)
chr3 (301-356)||(36468808-36468863)
chr3 (301-356)||(48167563-48167618)
chr3 (301-347)||(2357903-2357949)
chr3 (301-356)||(33248724-33248779)
chr3 (314-356)||(4742387-4742429)
chr3 (110-150)||(14244668-14244708)
[»] chr1 (13 HSPs)
chr1 (289-356)||(9667056-9667123)
chr1 (290-356)||(12167577-12167643)
chr1 (291-356)||(39000543-39000608)
chr1 (291-356)||(431702-431768)
chr1 (290-356)||(33491559-33491625)
chr1 (291-356)||(38121294-38121359)
chr1 (291-352)||(49249802-49249864)
chr1 (291-356)||(16832145-16832210)
chr1 (301-356)||(40999476-40999531)
chr1 (301-345)||(11738170-11738214)
chr1 (301-347)||(16131245-16131291)
chr1 (302-347)||(20225735-20225780)
chr1 (301-356)||(13217420-13217475)
[»] scaffold0298 (2 HSPs)
scaffold0298 (290-356)||(11565-11631)
scaffold0298 (290-356)||(15335-15401)
[»] chr7 (18 HSPs)
chr7 (290-356)||(8107249-8107315)
chr7 (291-356)||(10345668-10345733)
chr7 (293-356)||(23795828-23795891)
chr7 (291-356)||(6173250-6173315)
chr7 (290-356)||(22321161-22321228)
chr7 (290-356)||(31157636-31157703)
chr7 (291-356)||(2632131-2632196)
chr7 (290-356)||(19471595-19471661)
chr7 (291-352)||(22825347-22825408)
chr7 (301-356)||(2478395-2478450)
chr7 (301-356)||(12089831-12089886)
chr7 (301-356)||(31879333-31879388)
chr7 (311-347)||(2796945-2796981)
chr7 (301-347)||(31663884-31663930)
chr7 (301-356)||(12184594-12184650)
chr7 (301-341)||(3544250-3544290)
chr7 (315-347)||(4704776-4704808)
chr7 (299-347)||(45500081-45500129)
[»] scaffold0159 (1 HSPs)
scaffold0159 (291-356)||(28261-28326)
[»] scaffold0015 (1 HSPs)
scaffold0015 (291-356)||(175336-175401)
[»] chr5 (15 HSPs)
chr5 (291-356)||(9405159-9405224)
chr5 (291-356)||(11722638-11722703)
chr5 (291-356)||(30606438-30606503)
chr5 (291-354)||(33435339-33435402)
chr5 (293-356)||(34457030-34457093)
chr5 (290-356)||(14345195-14345261)
chr5 (291-356)||(7315939-7316004)
chr5 (291-356)||(16903971-16904036)
chr5 (291-352)||(24836461-24836522)
chr5 (291-352)||(31846685-31846746)
chr5 (290-356)||(11767489-11767556)
chr5 (301-356)||(27166470-27166525)
chr5 (301-345)||(6270636-6270680)
chr5 (291-347)||(42801049-42801105)
chr5 (301-347)||(34869116-34869162)
[»] chr4 (16 HSPs)
chr4 (291-356)||(5272925-5272990)
chr4 (291-356)||(22048416-22048481)
chr4 (291-356)||(4838498-4838563)
chr4 (293-356)||(44428753-44428817)
chr4 (301-356)||(33239651-33239706)
chr4 (291-356)||(19730882-19730947)
chr4 (291-356)||(324173-324239)
chr4 (301-356)||(21668276-21668331)
chr4 (301-356)||(21677040-21677095)
chr4 (301-356)||(35416068-35416123)
chr4 (301-356)||(40994919-40994974)
chr4 (301-356)||(55327506-55327561)
chr4 (301-347)||(26373003-26373049)
chr4 (301-347)||(52619246-52619292)
chr4 (314-356)||(26070462-26070504)
chr4 (314-347)||(1188708-1188741)
[»] chr6 (11 HSPs)
chr6 (290-356)||(8667666-8667732)
chr6 (291-354)||(3539784-3539848)
chr6 (291-356)||(5670638-5670704)
chr6 (291-356)||(9932166-9932232)
chr6 (291-354)||(16698646-16698709)
chr6 (303-354)||(26514801-26514853)
chr6 (301-356)||(32806135-32806190)
chr6 (301-344)||(14479848-14479891)
chr6 (301-356)||(21595900-21595955)
chr6 (301-347)||(24160626-24160672)
chr6 (314-356)||(25055942-25055984)
[»] scaffold0124 (1 HSPs)
scaffold0124 (290-356)||(12929-12996)
[»] scaffold0336 (1 HSPs)
scaffold0336 (291-356)||(9477-9543)
[»] scaffold0076 (1 HSPs)
scaffold0076 (291-356)||(25011-25077)
[»] scaffold0002 (1 HSPs)
scaffold0002 (290-356)||(349967-350033)
[»] scaffold0019 (2 HSPs)
scaffold0019 (291-356)||(168770-168835)
scaffold0019 (314-356)||(115953-115995)
[»] scaffold0444 (1 HSPs)
scaffold0444 (293-356)||(11850-11914)
[»] scaffold0147 (1 HSPs)
scaffold0147 (291-353)||(7469-7530)
[»] scaffold0014 (1 HSPs)
scaffold0014 (301-354)||(75677-75730)
[»] scaffold0617 (2 HSPs)
scaffold0617 (110-150)||(3274-3314)
scaffold0617 (110-150)||(8718-8758)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 45342497 - 45342338
Alignment:
Q  18 gttttgaattggtagcatcaacaaaggacatgagcagcatctcttcttcttcatcaatttcagcatagtttgcactttccttccatcttgggcattcata 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45342497 gttttgaattggtagcttcaacaaaggacatgagcagcatctcttcttcttcatcaatttcaacatagtttgcactttccttccatcttgggcattcata 45342398  T
Q  118 ttggaaatgtcctagtttgtgacatttaaaacactccactatggctttgtttgcaaattg 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342397 ttggaaatgtcctagtttgtgacatttaaaacactccactatggctttgtttgcaaattg 45342338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 45342275 - 45342224
Alignment:
Q  240 cattttgatcttcatgtgaaaccttcaacgcttgctcatctctagtgtctct 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45342275 cattttgatcttcatgtgaaaccttcaacgcttgctcatctctagtgtctct 45342224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 29224515 - 29224449
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  29224515 tgatgaaggatttttacctctcataaaactatttacacgtgagtatatataggatcgtgtccacagg 29224449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 29337814 - 29337748
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  29337814 tgatgaaggatttttacctctcataaaactatttacacgtgagtatatataggatcgtgtccacagg 29337748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 8679167 - 8679222
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8679167 tttttacatctcataaaactatttacacgtaagtataataggatcgtttccacagg 8679222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 36039624 - 36039687
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  36039624 tgatgaaggatttttccatctcataaaactatttacacgtaagtataataggatcgtgttcaca 36039687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 42700336 - 42700401
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  42700336 tgatgtaggatttttacatctcataaaactatttacacgtaagtataataggatcgtttccgcagg 42700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 31759068 - 31759013
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  31759068 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 31759013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 28006874 - 28006828
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  28006874 tttttacatgtcataaaactatttacacgtaagtataataggatcgt 28006828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 43992302 - 43992256
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  43992302 tttttacatgtcataaaactatttacacgtaagtataataggatcgt 43992256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 13229714 - 13229767
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||| ||||||    
T  13229714 tttttacatgtcataaaactatttacacgtaagtataatatgatcgtttccaca 13229767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 14701434 - 14701379
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  14701434 tttttacatgtcataaaactatttacacgtaagtataattggatcgtttccgcagg 14701379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28457249 - 28457304
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||| ||| ||||    
T  28457249 tttttacatgtcataaaactatttacacgtaagtataatatgatcgtttccgcagg 28457304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 36556934 - 36556989
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||| ||| ||||    
T  36556934 tttttacatgtcataaaactatttacacgtaagtataatatgatcgtttccgcagg 36556989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 9783654 - 9783699
Alignment:
Q  311 tcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| |||||||||||||||||||||||||| ||| ||||    
T  9783654 tcataaaactctttacacgtaagtataataggatcgtttccgcagg 9783699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 23924414 - 23924450
Alignment:
Q  311 tcataaaactatttacacgtaagtataataggatcgt 347  Q
    |||||||||||||||||||| ||||||||||||||||    
T  23924414 tcataaaactatttacacgtgagtataataggatcgt 23924450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 27258174 - 27258135
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataata 340  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  27258174 tttttacatgtcataaaactatttacacgtaagtataata 27258135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 24662499 - 24662545
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | ||||| |||||||||||||| ||||||||||||||||    
T  24662499 tttttacatgtcatataactatttacacgtgagtataataggatcgt 24662545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 9067527 - 9067594
Alignment:
Q  289 tctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9067527 tctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 9067594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 11308348 - 11308414
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11308348 ctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 11308414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 8742645 - 8742710
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8742645 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 8742710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 41576693 - 41576758
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41576693 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 41576758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 3299601 - 3299536
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3299601 tgatgaaggatttttacctctcataaaactatttacacataagtataataggatcgtgtccacagg 3299536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 27348826 - 27348761
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27348826 tgatgaaggatttttacctctcataaaactatttacacgtaagtataatagaatcgtgtccacagg 27348761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 34006135 - 34006200
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||    
T  34006135 tgatgaaggttttttccatctcataaaactatttgcacgtaagtataataggatcgtgtccacagg 34006200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 16583177 - 16583113
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccaca 354  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16583177 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccaca 16583113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 22181376 - 22181311
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22181376 tgatgaaggatttttccatctcataaaactattcacacgtaagtataataggatcgtgtccacagg 22181311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 28925514 - 28925570
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28925514 tttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 28925570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 28370895 - 28370832
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtcca 352  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  28370895 ctgatgaaggatttttacctctcataaaactatttacatgtaagtatatataggatcgtgtcca 28370832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 16959331 - 16959286
Alignment:
Q  311 tcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  16959331 tcataaaactatttacacgtaagtataataggatcgtttccgcagg 16959286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 13848699 - 13848754
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||| || |||||||||||||||| ||| ||||    
T  13848699 tttttacatgtcataaaactatttacaagtgagtataataggatcgtttccgcagg 13848754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 9990197 - 9990130
Alignment:
Q  289 tctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9990197 tctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 9990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 52307447 - 52307510
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52307447 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 52307510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 7652584 - 7652649
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7652584 tgataaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 7652649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 10385430 - 10385497
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10385430 ctgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 10385497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 8626424 - 8626358
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8626424 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 8626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 23383105 - 23383039
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23383105 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 23383039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 22098781 - 22098715
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| ||||| | ||||||||||||||||||| || |||||||||||||||||||||||||    
T  22098781 ctgatgaaggatttttccatctcataaaactatttacatgtgagtataataggatcgtgtccacagg 22098715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 23397096 - 23397030
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||    
T  23397096 tgatgaaggatttttacctcttataaaactatttacacgtaagtatatataggatcgtatccacagg 23397030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 20962620 - 20962676
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  20962620 tgatgtaggatttttacatctcataaaactatttacacgtaagtataataggatcgt 20962676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 27849913 - 27849977
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacag 355  Q
    ||||||||| ||||| | ||||||||||||||||||| || ||||||||||||||||||||||||    
T  27849913 tgatgaaggatttttccatctcataaaactatttacatgtgagtataataggatcgtgtccacag 27849977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 37023480 - 37023425
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  37023480 tttttacatctcataaaactatttacacgtaagtataatatgatcgagtccacagg 37023425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 11257847 - 11257903
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||    
T  11257847 tgatgtaggatttttacatctcataaaactatttacacataagtataataggatcgt 11257903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 36468808 - 36468863
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  36468808 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 36468863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 48167563 - 48167618
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||| || |||||    
T  48167563 tttttacatgtcataaaactatttatacgtaagtataataggatcgtttcgacagg 48167618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 2357949 - 2357903
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||    
T  2357949 tttttacatgtcataaaactatttacacgtaagtataatatgatcgt 2357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 33248779 - 33248724
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  33248779 tttttacatgtcataaaactatttacacataattataataggatcgtttccgcagg 33248724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 4742387 - 4742429
Alignment:
Q  314 taaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||    
T  4742387 taaaactatttacacgtgagtataataggatcgtttccgcagg 4742429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14244708 - 14244668
Alignment:
Q  110 cattcatattggaaatgtcctagtttgtgacatttaaaaca 150  Q
    |||||||||||||||||||| | |||||||||||| |||||    
T  14244708 cattcatattggaaatgtcccaatttgtgacatttgaaaca 14244668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 9667056 - 9667123
Alignment:
Q  289 tctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9667056 tctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 9667123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 12167577 - 12167643
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12167577 ctgatgaaggtttttcacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 12167643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 39000543 - 39000608
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39000543 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 39000608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 431702 - 431768
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  431702 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 431768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 33491559 - 33491625
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33491559 ctgataaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtctacagg 33491625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 38121294 - 38121359
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38121294 tgatgaaggatttttacctctcataaaattatttacacgtaagtataataagatcgtgtccacagg 38121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 49249864 - 49249802
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtcca 352  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  49249864 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatatatgatcgtgtcca 49249802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 16832145 - 16832210
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  16832145 tgatgtaggttttttacatctcataaaactatttacacgtgagtataataggatcgtttccgcagg 16832210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 40999476 - 40999531
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40999476 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 40999531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 11738170 - 11738214
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatc 345  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  11738170 tttttacatgtcataaaactatttacacgtaagtataataggatc 11738214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 16131291 - 16131245
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | ||||||||||||||||| |||||||||||||||||||    
T  16131291 tttttacatgtcataaaactatttacaagtaagtataataggatcgt 16131245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 20225735 - 20225780
Alignment:
Q  302 ttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||    
T  20225735 ttttacatgtcataaaactatttacacgaaagtataataggatcgt 20225780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 13217420 - 13217475
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||| ||||||||||| |||||||||||||||| ||| ||||    
T  13217420 tttttacatgtcataaaattatttacacgtgagtataataggatcgtttccgcagg 13217475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 11565 - 11631
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11565 ctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0298; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 15335 - 15401
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15335 ctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 15401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 8107249 - 8107315
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8107249 ctgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 8107315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 10345668 - 10345733
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10345668 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 10345733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 23795891 - 23795828
Alignment:
Q  293 atgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23795891 atgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 23795828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 6173315 - 6173250
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6173315 tgatgaaggatttttacctctcataaaactatttacatgtaagtataataggatcgtgtccacagg 6173250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 22321161 - 22321228
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22321161 ctgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 22321228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 31157636 - 31157703
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31157636 ctgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 31157703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 2632196 - 2632131
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2632196 tgataaaggatttttacctctcataaaactatttacacgtgagtataataggatcgtgtccacagg 2632131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 19471595 - 19471661
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||| | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19471595 ctgatgaatgatttttccatctcataaaactatttacacgtaagtataataggatcgtgtccacagg 19471661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 22825408 - 22825347
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtcca 352  Q
    ||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||    
T  22825408 tgatgaaggatttttccatctcataaaactatttacacgtgagtataataggatcgtgtcca 22825347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 2478450 - 2478395
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  2478450 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 2478395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 12089831 - 12089886
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12089831 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 12089886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 31879388 - 31879333
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  31879388 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 31879333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 2796945 - 2796981
Alignment:
Q  311 tcataaaactatttacacgtaagtataataggatcgt 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  2796945 tcataaaactatttacacgtaagtataataggatcgt 2796981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 31663884 - 31663930
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | ||||||||| |||||||||||||||||||||||||||    
T  31663884 tttttacatgtcataaaaccatttacacgtaagtataataggatcgt 31663930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 12184650 - 12184594
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||  ||||||||    
T  12184650 tttttacatctcataaaactatttacacgtgagtatatataggatcgaatccacagg 12184594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 3544250 - 3544290
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataatag 341  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  3544250 tttttacatgtcataaaactatttacaagtaagtataatag 3544290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 347
Target Start/End: Original strand, 4704776 - 4704808
Alignment:
Q  315 aaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||||||||||||||||||||||| |||||    
T  4704776 aaaactatttacacgtaagtataatagaatcgt 4704808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 45500081 - 45500129
Alignment:
Q  299 gttttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||||| | ||||| |||||||||||||| ||||||||| ||||||    
T  45500081 gttttttacatgtcatagaactatttacacgtgagtataatatgatcgt 45500129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 28261 - 28326
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28261 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 28326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 175401 - 175336
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  175401 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 175336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 9405224 - 9405159
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9405224 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 9405159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 11722638 - 11722703
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11722638 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 11722703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 30606438 - 30606503
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30606438 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 30606503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 33435402 - 33435339
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33435402 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 33435339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 34457093 - 34457030
Alignment:
Q  293 atgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34457093 atgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 34457030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 14345261 - 14345195
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14345261 ctgatgaagaatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 14345195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 7316004 - 7315939
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7316004 tgatgaaggatttttccctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 7315939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 16903971 - 16904036
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16903971 tgatgaaagatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 16904036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 24836522 - 24836461
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtcca 352  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24836522 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtcca 24836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 31846746 - 31846685
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtcca 352  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31846746 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtcca 31846685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 11767556 - 11767489
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11767556 ctgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 11767489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 27166470 - 27166525
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  27166470 tttttacatctcataaaactatttacacgtcagtataataggatcgtttccgcagg 27166525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 6270680 - 6270636
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatc 345  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||    
T  6270680 tttttacatgtcataaaactatttacacgtgagtataataggatc 6270636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 42801105 - 42801049
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||| ||| ||||||| | |||||||||||||||||||| | ||||||||||||||    
T  42801105 tgatgtaggatttttacatgtcataaaactatttacacgtgactataataggatcgt 42801049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 34869116 - 34869162
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | ||||||||||||||||| || ||||||||||||||||    
T  34869116 tttttacatgtcataaaactatttacatgtgagtataataggatcgt 34869162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 5272925 - 5272990
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5272925 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 5272990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 22048481 - 22048416
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22048481 tgatgaaggatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 22048416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 4838498 - 4838563
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4838498 tgatgaaagatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 4838563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 44428753 - 44428817
Alignment:
Q  293 atgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44428753 atgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 44428817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 33239706 - 33239651
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33239706 tttttacctctcattaaactatttacacgtaagtataataggatcgtgtccacagg 33239651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 19730882 - 19730947
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  19730882 tgatgaaggatttttacctctcataaaacttttcacatgtaagtataataggatcgtgtccacagg 19730947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 324239 - 324173
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  324239 tgatgaaggatttttacctctcataaaactatttacacatgagtatatataggatcgtgtccacagg 324173  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 21668276 - 21668331
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  21668276 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 21668331  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 21677040 - 21677095
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  21677040 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 21677095  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 35416068 - 35416123
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||    
T  35416068 tttttacatgtcataaaactatttacacgtaagtataataggatcgtttccgcagg 35416123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 40994919 - 40994974
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||| || |||||    
T  40994919 tttttacatgtcataaaactatttacacgtaagtataataagatcgtttctacagg 40994974  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Complemental strand, 55327561 - 55327506
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||||||||||||| |||||| ||| ||||    
T  55327561 tttttacatatcataaaactatttacacgtaagtataatatgatcgtttccgcagg 55327506  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 26373003 - 26373049
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||    
T  26373003 tttttacatttcataaaactatttacacgtaagtatgataggatcgt 26373049  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 52619292 - 52619246
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||    
T  52619292 tttttacatgtcataaaactatttacacgtaagtataacaggatcgt 52619246  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 26070504 - 26070462
Alignment:
Q  314 taaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||    
T  26070504 taaaactatttacacgtgagtataataggatcgtttccgcagg 26070462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 1188741 - 1188708
Alignment:
Q  314 taaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||||||||||||| ||||||||||||||||    
T  1188741 taaaactatttacacgttagtataataggatcgt 1188708  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 8667732 - 8667666
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8667732 ctgatgaaagatttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 8667666  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 3539848 - 3539784
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccaca 354  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3539848 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccaca 3539784  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 5670638 - 5670704
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||| ||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  5670638 tgatgtaggatttttacctctcataaaactatttacacgtgagtatatataggatcgtgtccacagg 5670704  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 9932166 - 9932232
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9932166 tgatgaaagatttttacctctcataaaactctttacacgtaagtatatataggatcgtgtccacagg 9932232  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 16698709 - 16698646
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||||| ||||| | |||||||||||||||||||||| ||||||||||||| |||||||||    
T  16698709 tgatgaaggatttttccatctcataaaactatttacacgtgagtataataggattgtgtccaca 16698646  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 26514801 - 26514853
Alignment:
Q  303 tttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccaca 354  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  26514801 tttacctctcataaaactatttacacgtaagtatatataggatcttgtccaca 26514853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 32806135 - 32806190
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| ||||||||    
T  32806135 tttttacatgtcataaaactatttacacgtaagtatgataggatcgtttccacagg 32806190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 14479891 - 14479848
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggat 344  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||    
T  14479891 tttttacatctcataaaactatttacatgtaagtataataggat 14479848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 21595900 - 21595955
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||| ||| ||||    
T  21595900 tttttacatgtcataaaactatttacacgtgagtataataggatcgtttccgcagg 21595955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 24160626 - 24160672
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgt 347  Q
    ||||||| | ||||||||||||| ||| |||||||||||||||||||    
T  24160626 tttttacatgtcataaaactattaacatgtaagtataataggatcgt 24160672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 25055942 - 25055984
Alignment:
Q  314 taaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||    
T  25055942 taaaactatttacacgtaagtataataagatcgtttccgcagg 25055984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 12996 - 12929
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12996 ctgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 12929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 9543 - 9477
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9543 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 9477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 25011 - 25077
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25011 tgatgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 25077  T

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Target: scaffold0002 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 356
Target Start/End: Original strand, 349967 - 350033
Alignment:
Q  290 ctgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  349967 ctgataaaggatttttacctctcacaaaactatttacacgtaagtataataggatcgtgtccacagg 350033  T

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Target: scaffold0019 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 168770 - 168835
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  168770 tgatgaaggatttttacttctcataaaactacttacacgtaagtataataggatcgtgtccacagg 168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 115953 - 115995
Alignment:
Q  314 taaaactatttacacgtaagtataataggatcgtgtccacagg 356  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||    
T  115953 taaaactatttacacgtgagtataataggatcgtttccgcagg 115995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 11850 - 11914
Alignment:
Q  293 atgaaggttttttacctctcataaaactatttacacgtaagtata-ataggatcgtgtccacagg 356  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11850 atgaaggatttttacctctcataaaactatttacacgtaagtatatataggatcgtgtccacagg 11914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 7530 - 7469
Alignment:
Q  291 tgatgaaggttttttacctctcataaaactatttacacgtaagtataataggatcgtgtccac 353  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  7530 tgatgaaggatttttacctctcataaaactatttacacgtgagtataataggat-gtgtccac 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 354
Target Start/End: Original strand, 75677 - 75730
Alignment:
Q  301 tttttacctctcataaaactatttacacgtaagtataataggatcgtgtccaca 354  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  75677 tttttacatgtcataaaactatttacacgtgagtataataggatcgtgtccaca 75730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0617 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0617
Description:

Target: scaffold0617; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 3274 - 3314
Alignment:
Q  110 cattcatattggaaatgtcctagtttgtgacatttaaaaca 150  Q
    |||||||||||||||||||| | |||||||||||| |||||    
T  3274 cattcatattggaaatgtcccaatttgtgacatttgaaaca 3314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0617; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 8718 - 8758
Alignment:
Q  110 cattcatattggaaatgtcctagtttgtgacatttaaaaca 150  Q
    |||||||||||||||||||| | |||||||||||| |||||    
T  8718 cattcatattggaaatgtcccaatttgtgacatttgaaaca 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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