View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21499_low_5 (Length: 316)
Name: NF21499_low_5
Description: NF21499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21499_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 2549878 - 2550146
Alignment:
| Q |
13 |
aatatcttgatacaagattccaacataaaatctggtaattaaagtttattatcttatgatattttaaatttttagtatgccttaaaaaagattatataga |
112 |
Q |
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| T |
2549878 |
aatatcttgatacaagattccaacataaaatctggtaattcaagtttattatcttatgatattttaaatttttagtatgccttaaaaaagattatataga |
2549977 |
T |
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| Q |
113 |
tgtctaaaaaagattatattattttatgaaatatcattttatgagtcaaatggaataaataacatttgtgtcaatttaatttgatttccaatttttcttt |
212 |
Q |
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| T |
2549978 |
tgtctaaaaaagattatattattttatga---------------gtcaaatagaataaataacat--gtgtcaatttaatttgatttccaatttttcttt |
2550060 |
T |
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| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggat |
298 |
Q |
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| T |
2550061 |
taaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggat |
2550146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 2565249 - 2565340
Alignment:
| Q |
204 |
tttttcttttaaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgg |
295 |
Q |
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| T |
2565249 |
tttttcttttaaataggtgatgattgtattgcggttaacggtggctccttttttattaatattactcgggttacttgcggaccaggccatgg |
2565340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 2541794 - 2541876
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgg |
295 |
Q |
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| T |
2541794 |
taaacaggtgatgattgtattgccatcaatggtggctcctcttttgtcaatgctacaaggattacttgtggacctggccatgg |
2541876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 2532202 - 2532284
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgg |
295 |
Q |
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| T |
2532202 |
taaacaggtgatgattgtattgcagtcaatggtggttctacttttgtcaatgctataaggattacttgtggacctggccatgg |
2532284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 2555618 - 2555700
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgg |
295 |
Q |
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| T |
2555618 |
taaataggtgatgattgtattgcgcttaatagtggctccttttttattaatgttactcgggttacttgcggaccaggccatgg |
2555700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 1830030 - 1830102
Alignment:
| Q |
29 |
attccaacataaaatctggtaattaaagttta--ttatcttatgatattttaaatttttagtatgccttaaaa |
99 |
Q |
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| T |
1830030 |
attccaacataaaatctggtaattaaactttatgtaatattataatattttaaatatttagtatgtcttaaaa |
1830102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 1864475 - 1864547
Alignment:
| Q |
29 |
attccaacataaaatctggtaattaaagttta--ttatcttatgatattttaaatttttagtatgccttaaaa |
99 |
Q |
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| T |
1864475 |
attccaacataaaatctggtaattaaactttatgtaatattataatattttaaatatttagtatgtcttaaaa |
1864547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 32924773 - 32924819
Alignment:
| Q |
205 |
ttttcttttaaataggtgacgattgtattgccgtaaatggtggctcc |
251 |
Q |
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| T |
32924773 |
ttttcttataaataggtgatgattgtattgccatcaatggtggctcc |
32924819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 1830237 - 1830317
Alignment:
| Q |
218 |
aggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggat |
298 |
Q |
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| T |
1830237 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggat |
1830317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 1864682 - 1864762
Alignment:
| Q |
218 |
aggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggat |
298 |
Q |
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| T |
1864682 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggat |
1864762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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