View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2149_low_1 (Length: 1236)

Name: NF2149_low_1
Description: NF2149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2149_low_1
NF2149_low_1
[»] chr1 (9 HSPs)
chr1 (173-933)||(44131558-44132335)
chr1 (932-1229)||(44131195-44131496)
chr1 (932-1208)||(44149804-44150086)
chr1 (173-670)||(44140241-44140757)
chr1 (1-137)||(44128139-44128275)
chr1 (1-137)||(44132344-44132480)
chr1 (1-137)||(44140766-44140902)
chr1 (173-382)||(44127903-44128130)
chr1 (803-929)||(44123739-44123864)
[»] chr7 (5 HSPs)
chr7 (1-133)||(5309663-5309795)
chr7 (1-133)||(5290157-5290289)
chr7 (1-133)||(5302026-5302158)
chr7 (1-114)||(5283857-5283970)
chr7 (1-114)||(5314499-5314612)
[»] chr5 (6 HSPs)
chr5 (1-128)||(1481680-1481807)
chr5 (1-128)||(1491570-1491697)
chr5 (1-111)||(1477586-1477696)
chr5 (1-111)||(1504351-1504461)
chr5 (1-119)||(1496789-1496907)
chr5 (1-78)||(1485466-1485543)
[»] chr2 (1 HSPs)
chr2 (1-107)||(24165512-24165618)
[»] chr3 (1 HSPs)
chr3 (378-625)||(16455580-16455836)
[»] chr8 (1 HSPs)
chr8 (1072-1121)||(31614036-31614085)
[»] chr6 (1 HSPs)
chr6 (532-608)||(1955345-1955419)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 173 - 933
Target Start/End: Complemental strand, 44132335 - 44131558
Alignment:
Q  173 tggttttgtttgtagtacttgtttggtgtaaaagaaagagaa-gggtgaaggaagagtgttgtggtggaaagatg-tatgtaatgaaattgttttatatg 270  Q
    ||||||||||||||||||||||| |   | |||||||||||| |||||||||||||||||||||||||||||||| ||||  |||| || ||||||||||    
T  44132335 tggttttgtttgtagtacttgtt-gtaattaaagaaagagaaagggtgaaggaagagtgttgtggtggaaagatggtatgggatgagatggttttatatg 44132237  T
Q  271 aaggaaagagtggaaaagggtaggtagctgaacat--------------------tatgcacatttttatattcaacaatggctggctggctatatgggt 350  Q
     ||||| ||||||||  |||| |||||||||||||                    |||||||||||| ||||||||||||||||||||||||||||||||    
T  44132236 gaggaatgagtggaa--gggttggtagctgaacatcacgtgtttgagtaaaacgttatgcacattttaatattcaacaatggctggctggctatatgggt 44132139  T
Q  351 gcgtccatgaacttaccatgtaggagactttgaataccctctccagtcaaaatccccnnnnnnnnaatgattattttaaggaagaaaactgatattttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  44132138 gcgtccatgaacttaccatgtaggagactttgaataccctctccagtcaaaatcccctttttt--aatgattattttaaggaagaaaactgatattttac 44132041  T
Q  451 ttgagctatatttaaaaattattttacacatgtttcgccacatcaattaattagtatgatcattcatgtgctttatattcaataattgacgtgtcaacat 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44132040 ttgagctatatttaaaaattattttacacatgtttcgccacatcaattaattagtatgatcattcttgtgctttatattcaataattgacgtgtcaacat 44131941  T
Q  551 atatgattgaatgtatgtgtaaaatgataatacatcgacaatgtatactaattaaattctttattttaaaatgcaaaattattttagtatttgagaataa 650  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44131940 atatgattgaatgtatgtgtaaaatgataatacatcgacaatgtatactaattaaattctttattttaaaatgcaaaattattttagtatttgagaataa 44131841  T
Q  651 accgttcaatttgattcttgagnnnnnnnnnnnncaactcttaatttctggagnnnnnnnnttgggacaatttggttcctacatgaattaccatcaataa 750  Q
    ||||||||||||||||||||||            |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  44131840 accgttcaatttgattcttgagaaaaataaaaaacaactcttaatttctggagaaaaaaaattgggacaatttggttcctacatgaattaccatcaataa 44131741  T
Q  751 taaaaatagatagtttgtctacaactactgcccaactggtaaaaatttgactctcttgaaacaagcatgtgctcaaaacagtagagaagccacaaaataa 850  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  44131740 taaaaatagatagtttgtctacaactactgcccaactggtaaaaatatgactctcttgaaacaagcatgtgctaaaaacagaagagaagccacaaaataa 44131641  T
Q  851 taatatccctaaaagttcaaggagaaggacattctgagtaatgcaagaactttgatccaactatgccagaaacaatcattaag 933  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44131640 taatatccctaaaagttcaaggagaaggacattctgagtaatgcaagaactttgatccaactatgccagaaacaatcattaag 44131558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 932 - 1229
Target Start/End: Complemental strand, 44131496 - 44131195
Alignment:
Q  932 agtatgctcaatcttgttgcaagccttgtgaaggtatgctgtttctgcttatctgctttaaatctaaataaataatttgaaaagtgtatttttaatt--- 1028  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  44131496 agtatgctcaatcttgttgcaagccttgtgaaggtatgctgtttctgcttatctgctttaaatctaaataaataatttgaaaagtgtatttttaattact 44131397  T
Q  1029 -cacaatattttaaaatactaaaagtgtattttcnnnnnnnttcaatgattactgtgaaatattggtttgaagaaggatgtaggagagaacaccaatgac 1127  Q
     |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |||||    
T  44131396 tcacaatattttaaaatactaaaagtgtattttcaaaaaaattcaatgattactgtgaaatattggttcgaagaagaatgtaggagagagcaccgatgac 44131297  T
Q  1128 tgaatgaatatgtgaccaggactttaacgtcattttatttataaagagaacacatataatacagctatatagtagcagaaggaaggataatatattcttc 1227  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||    
T  44131296 tgaattaatatgtgaccaggactttgacgtcattttatttataaagagaacatatataatacagctatatagtagcagaaagaaggataatatatttttc 44131197  T
Q  1228 ga 1229  Q
    ||    
T  44131196 ga 44131195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-106
Query Start/End: Original strand, 932 - 1208
Target Start/End: Complemental strand, 44150086 - 44149804
Alignment:
Q  932 agtatgctcaatcttgttgcaagccttgtgaaggtatgctgtttctgcttatctgctttaaatctaaataaataatttgaaa-------agtgtattttt 1024  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |       | ||| |||||    
T  44150086 agtatgcttaatcttgttgcaagccttgtgaaggtatgccgtttctgcttatctgctttaaatctaaataaataatttgagatctttgtactgtcttttt 44149987  T
Q  1025 aattcacaatattttaaaatactaaaagtgtattttcnnnnnnnttcaatgattactgtgaaatattggtttgaagaaggatgtaggagagaacaccaat 1124  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44149986 aattcacaatattttaaaatactaaaagtgtattttcaaaaaaattcaatgattactgtgaaatattggtttgaagaaggatgtaggagagaacaccgat 44149887  T
Q  1125 gactgaatgaatatgtgaccaggactttaacgtcattttatttataaagagaacacatataatacagctatatagtagcagaag 1208  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  44149886 gactgaatgaatatgtgaccaggattttaacgtcattttatttat-aagagaacacagataatacagctatatagtagcagaag 44149804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 173 - 670
Target Start/End: Complemental strand, 44140757 - 44140241
Alignment:
Q  173 tggttttgtttgtagtacttgtttggtgtaaaagaaagagaa-gggtgaaggaagagtgttgtggtggaaagatg-tatgtaatgaaattgttttatatg 270  Q
    ||||||||||||||||||||||| |   | |||||||||||| |||||||||||||||||||||||||||||||| ||||  |||| || ||||||||||    
T  44140757 tggttttgtttgtagtacttgtt-gtaattaaagaaagagaaagggtgaaggaagagtgttgtggtggaaagatggtatgggatgagatggttttatatg 44140659  T
Q  271 aaggaaagagtggaaaagggtaggtagctgaacat--------------------tatgcacatttttatattcaacaatggctggctggctatatgggt 350  Q
     ||||| ||||||||  |||| |||||||||||||                    |||||||||||| ||||||||||||||||||||||||||||||||    
T  44140658 gaggaatgagtggaa--gggttggtagctgaacatcacgtgtttgagtaaaacgttatgcacattttaatattcaacaatggctggctggctatatgggt 44140561  T
Q  351 gcgtccatgaacttaccatgtaggagactttgaataccctctccagtcaaaatccccnnnnnnnnaatgattattttaaggaagaaaactgatattttac 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  44140560 gcgtccatgaacttaccatgtaggagactttgaataccctctccagtcaaaatcccc--ttttttaatgattattttaaggaagaaaactgatattttac 44140463  T
Q  451 ttgag----------------ctatatttaaaaattattttacacatgtttcgccacatcaattaattagtatgatcattcatgtgctttatattcaata 534  Q
    |||||                 ||||||||||||| ||||||||||||||| | ||| ||||||||||| ||| |||||||||||| |||||||| ||||    
T  44140462 ttgagtttaattaccatacacatatatttaaaaatgattttacacatgttttgtcacttcaattaattaatatcatcattcatgtg-tttatatttaata 44140364  T
Q  535 attgacgtgtc-aacatatatgattgaatgtatgtgtaaaatgataatacatcgacaatgtatactaattaaattctttattttaaaatgcaaaattatt 633  Q
    ||||| || || ||||||||||||||||| |||||||||||||              ||| |||||||||||||| | ||| || ||||||||  |||||    
T  44140363 attgatgtatcaaacatatatgattgaatatatgtgtaaaatg--------------atgaatactaattaaattatgtatgttgaaatgcaactttatt 44140278  T
Q  634 ttagtatttgagaataaaccgttcaatttgattcttg 670  Q
    |||| || | ||||||||| |||||||||||||||||    
T  44140277 ttagaatctaagaataaacagttcaatttgattcttg 44140241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44128275 - 44128139
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||    
T  44128275 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44128176  T
Q  101 acattcaccatattaatatctttggtagcaaatgaaa 137  Q
    ||| | |||||||| ||||||||||||||||||||||    
T  44128175 acactaaccatattgatatctttggtagcaaatgaaa 44128139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44132480 - 44132344
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||    
T  44132480 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44132381  T
Q  101 acattcaccatattaatatctttggtagcaaatgaaa 137  Q
    ||| | |||||||| ||||||||||||||||||||||    
T  44132380 acactaaccatattgatatctttggtagcaaatgaaa 44132344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 44140902 - 44140766
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||    
T  44140902 aggatatgtgctttgttcaacacaattggctgggtttgcagtgccaatggctaaaatggttgcagggccttctgccctttgagcattgcgaatttcagac 44140803  T
Q  101 acattcaccatattaatatctttggtagcaaatgaaa 137  Q
    ||| | |||||||| ||||||||||||||||||||||    
T  44140802 acactaaccatattgatatctttggtagcaaatgaaa 44140766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 173 - 382
Target Start/End: Complemental strand, 44128130 - 44127903
Alignment:
Q  173 tggttttgtttgtagtacttgtttggtgtaaaagaaagagaagggtgaaggaagagtgttgtggtggaaagatgtatgtaatgaaattgttttatatgaa 272  Q
    ||||||||||||||||||||||| |   | |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||    
T  44128130 tggttttgtttgtagtacttgtt-gtaattaaagaaagagaagggtgaaggaagagtgttgtagtggaaagatgtatggaatgagatggttttatatgaa 44128032  T
Q  273 ggaaagagtggaaaagggtaggtagctg---------------------aacattatgcacatttttatattcaacaatggctggctggctatatgggtg 351  Q
    || ||||||||   ||||||||||||||                     |||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  44128031 gggaagagtgg--cagggtaggtagctgaacagcacgttttttggtaaaaacattatgcacatttttttattcaactatggctggctggctagatgggtg 44127934  T
Q  352 cgtccatgaacttaccatgtaggagactttg 382  Q
     ||||||||||||||||||||||||| ||||    
T  44127933 agtccatgaacttaccatgtaggagagtttg 44127903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 803 - 929
Target Start/End: Complemental strand, 44123864 - 44123739
Alignment:
Q  803 ctcttgaaacaagcatgtgctcaaaacagtagagaagccacaaaataataatatccctaaaa-gttcaaggagaaggacattctgagtaatgcaagaact 901  Q
    |||||||||||   ||| ||| ||||||| |||||||| |||||||||||||| |||||||| ||||||||| |  ||||||   ||||||| ||||| |    
T  44123864 ctcttgaaacagctatgagctgaaaacagaagagaagctacaaaataataatacccctaaaaagttcaaggaaa--gacatttgaagtaatgtaagaatt 44123767  T
Q  902 ttgatccaactatgccagaaacaatcat 929  Q
    ||||||||||||||| ||||||||||||    
T  44123766 ttgatccaactatgctagaaacaatcat 44123739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 7e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5309795 - 5309663
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||    
T  5309795 aggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatagttgcaggaccttctgctctttgagcattacgaatttcagac 5309696  T
Q  101 acattcaccatattaatatctttggtagcaaat 133  Q
    ||| ||||||| || |||||||| || ||||||    
T  5309695 acactcaccattttgatatctttagttgcaaat 5309663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 5290157 - 5290289
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||    
T  5290157 aggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagac 5290256  T
Q  101 acattcaccatattaatatctttggtagcaaat 133  Q
    ||| ||||||| || |||||||||||| |||||    
T  5290257 acactcaccattttgatatctttggtatcaaat 5290289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5302158 - 5302026
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||||||||||    
T  5302158 aggataagtgctttgttcaacacaatttgctggatttgcagtgccaatggctaagatagttgcaggaccttctgccctttgagctttacgaatttcagac 5302059  T
Q  101 acattcaccatattaatatctttggtagcaaat 133  Q
    ||| ||||||| || |||||||||||| |||||    
T  5302058 acactcaccattttgatatctttggtatcaaat 5302026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5283970 - 5283857
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| || ||||||||||||    
T  5283970 aggatacgtgctttgttcaacacaatttgctggatttgcagtcccaatggccaagatggttgcagggccttctgccctttgagctttacgaatttcagac 5283871  T
Q  101 acattcaccatatt 114  Q
    ||| ||||||||||    
T  5283870 acactcaccatatt 5283857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5314612 - 5314499
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || |||||||| |||||||| |||||||| || ||||||||||||    
T  5314612 aggatatgtgctttgttcaacacaatttgctggatttgcagtaccaatggccaaaatggttgcaggaccttctgctctttgagccttacgaatttcagac 5314513  T
Q  101 acattcaccatatt 114  Q
    ||| ||||||||||    
T  5314512 acactcaccatatt 5314499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 2e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1481807 - 1481680
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||     
T  1481807 aggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagat 1481708  T
Q  101 acattcaccatattaatatctttggtag 128  Q
    ||| ||||||| ||  ||| ||||||||    
T  1481707 acactcaccatcttggtatttttggtag 1481680  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1491697 - 1491570
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||     
T  1491697 aggatatgtgctttgttcaacacagtttgctggatttgcagtgccaatggccaatatggttgcaggaccttctgccctttgagccttgcgaatttcagat 1491598  T
Q  101 acattcaccatattaatatctttggtag 128  Q
    ||| ||||||| ||  ||| ||||||||    
T  1491597 acactcaccatcttggtatttttggtag 1491570  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1477696 - 1477586
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||||||||  || || ||||||||||||||||| ||||| ||||||||||||||     
T  1477696 aggatatgtgctttgttcaacacagttggctggatttgcagtgccaatggccatgatggtggcagggccttctgccctctgagccttgcgaatttcagat 1477597  T
Q  101 acattcaccat 111  Q
    ||| |||||||    
T  1477596 acactcaccat 1477586  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1504461 - 1504351
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    ||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| || |||||||| |||||||| || ||||| ||||||||||||||     
T  1504461 aggatatgtgctttgttcaacacaatttggtggatttgcagtgccaatggccaaaatggttgcaggaccttctgctctctgagccttgcgaatttcagat 1504362  T
Q  101 acattcaccat 111  Q
    ||| |||||||    
T  1504361 acactcaccat 1504351  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1496907 - 1496789
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||| |||||| | ||| |||||||| ||||| || || ||||||| |||||||||||||||||||||  | |||||||||||     
T  1496907 aggatatgtgctttgttcaatacaatttgttggatttgcagtgccaatagctaagatagttgtagggccttctgccctttgagcccttcgaatttcagat 1496808  T
Q  101 acattcaccatattaatat 119  Q
    ||| | ||||| |||||||    
T  1496807 acagttaccatcttaatat 1496789  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1485543 - 1485466
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccct 78  Q
    ||||||||||||||||||||||||||| | ||| ||||||||||| |||||||| ||  |||||||||||||||||||    
T  1485543 aggatatgtgctttgttcaacacaatttggtggatttgcagttcctatggccaagatgattgcagggccttctgccct 1485466  T

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Target: chr2 (Bit Score: 71; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24165512 - 24165618
Alignment:
Q  1 aggatatgtgctttgttcaacacaattggctgggtttgcagttccaatggccaatatagttgcagggccttctgccctttgagcattgcgaatttcagac 100  Q
    |||||||||||||||||||||||| || | ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||    
T  24165512 aggatatgtgctttgttcaacacagtttggtggatttgcagtgccaatggccaagatagttgcagggccttctgccctttgagccttacgaatttcagac 24165611  T
Q  101 acattca 107  Q
    || ||||    
T  24165612 accttca 24165618  T

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Target: chr3 (Bit Score: 68; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 378 - 625
Target Start/End: Original strand, 16455580 - 16455836
Alignment:
Q  378 ctttgaataccctctccagtcaaaatccccnnnnnnnnaatgattattttaaggaagaaaactgatattttacttgagct----------------atat 461  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| |                ||||    
T  16455580 ctttgaataccctctccagtcaaaatcccctttttt--aatgattattttaaggaagaaaactgatattttacttgagtttaattaccatacacatatat 16455677  T
Q  462 ttaaaaattattttacacatgtttcgccacatcaattaattagtatgatcattcatgtgctttatattcaataattgacgtgtcaacatata------tg 555  Q
    |||||||||||| |||| |||||| ||||||||||||||||| ||| |||||||         ||||| ||||||||| |||||||||||||      ||    
T  16455678 ttaaaaattattatacagatgtttagccacatcaattaattaatatcatcattc---------atatttaataattgatgtgtcaacatatatataattg 16455768  T
Q  556 attgaatgtatgt-gtaaaatgataatacatcgacaatgtatactaattaaattctttattttaaaatgca 625  Q
    ||||||| ||||| |||||||||||||| ||||||||| |||||||||||||   ||||||||||||||||    
T  16455769 attgaatatatgtagtaaaatgataatatatcgacaatatatactaattaaa---tttattttaaaatgca 16455836  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1072 - 1121
Target Start/End: Complemental strand, 31614085 - 31614036
Alignment:
Q  1072 aatgattactgtgaaatattggtttgaagaaggatgtaggagagaacacc 1121  Q
    ||||||| |||| ||||||||||| || ||||||||||||||||||||||    
T  31614085 aatgattgctgtaaaatattggttagaggaaggatgtaggagagaacacc 31614036  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 608
Target Start/End: Original strand, 1955345 - 1955419
Alignment:
Q  532 ataattgacgtgtcaacatatatgattgaatgtatgtgtaaaatgataatacatcgacaatgtatactaattaaatt 608  Q
    |||||||||||| ||| | |||  ||| |||||||||||||||| ||  ||||  ||||||||||||||||||||||    
T  1955345 ataattgacgtgacaatacata--attaaatgtatgtgtaaaataattgtacactgacaatgtatactaattaaatt 1955419  T

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