View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21500_high_1_N (Length: 398)
Name: NF21500_high_1_N
Description: NF21500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21500_high_1_N |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 110 - 382
Target Start/End: Complemental strand, 33808213 - 33807942
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
309 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactctgatga |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatga |
33807942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 110 - 382
Target Start/End: Complemental strand, 33811867 - 33811596
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
309 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactctgatga |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatga |
33811596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 110 - 382
Target Start/End: Complemental strand, 33816785 - 33816514
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
309 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactctgatga |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatga |
33816514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13868065 - 13868175
Alignment:
| Q |
1 |
ccgtggatgacattgttaaaataattcttggattctgggtgcagctgaaagaagacgttatgatgagcgattggagcgtagaacgtctcagtgatgaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13868065 |
ccgtggatgacattgttaaaataactcttggattcaaggtgcggctgaaagaagacgttaggatgagcgattggagcgtagaacgtctcagtgatgaaca |
13868164 |
T |
|
| Q |
101 |
agttgtttatg |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
13868165 |
agttgtttatg |
13868175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 16698670 - 16698620
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
160 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
16698670 |
tgttgggaaatatatgcataatttccatcctccgtgaactcagaataggca |
16698620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||| ||||||| |||||||| |||||| |||| ||||| | ||||||| | | ||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 110 - 377
Target Start/End: Original strand, 31151926 - 31152195
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaa-accacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
307 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
308 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactct |
377 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactct |
31152195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 306
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||| | ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
22981614 |
T |
|
| Q |
201 |
cgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
296 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
22981514 |
T |
|
| Q |
297 |
ctcaggtgga |
306 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22981513 |
cttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
200 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||| | ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
23806794 |
T |
|
| Q |
201 |
cgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
296 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
23806795 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
23806894 |
T |
|
| Q |
297 |
ctcaggtgga |
306 |
Q |
| |
|
|| ||||||| |
|
|
| T |
23806895 |
cttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 368
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
186 |
acaacaaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccacta-taataataatgggaat |
283 |
Q |
| |
|
||||||||||||||| || ||||||||||| | ||| | |||||||||| || ||||| | || | ||||||||||| | || ||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
284 |
acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
368 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 110 - 372
Target Start/End: Complemental strand, 50603403 - 50603138
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
308 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
309 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcac |
372 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctctcac |
50603138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 107 - 306
Target Start/End: Original strand, 44782521 - 44782733
Alignment:
| Q |
107 |
ttatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaa-----------aatgacacacaacaaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||||| || | ||| |
|
|
| T |
44782521 |
ttatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagaca--ctagcggaaacgtgaaatataaacgtaatgacaca-aagagaat |
44782617 |
T |
|
| Q |
196 |
tttagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atc |
290 |
Q |
| |
|
||||||||||||||||||||| || |||| |||| |||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||| | | |
|
|
| T |
44782618 |
tttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaac |
44782717 |
T |
|
| Q |
291 |
ttcaccctcaggtgga |
306 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
44782718 |
ttcacccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 359
Target Start/End: Original strand, 54967209 - 54967477
Alignment:
| Q |
109 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaa-----------aatgacacacaacaaaattt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
54967209 |
atgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggca--ctagcggaaacgtgaaataaaagcgtaatgacaca-aagagaattt |
54967305 |
T |
|
| Q |
198 |
tagcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atctt |
292 |
Q |
| |
|
||||||||||||||||||| || |||| || |||||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
54967306 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaactt |
54967405 |
T |
|
| Q |
293 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967406 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
261 |
tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
360 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
361 |
ttttt |
365 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 359
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa-atc |
290 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
291 |
ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 306
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
| Q |
122 |
cctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| | ||||||||||| |||| |||||| || | ||||||||| |||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac |
54979950 |
T |
|
| Q |
211 |
cttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg |
305 |
Q |
| |
|
||||||| | |||| |||| |||||||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
54979951 |
cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg |
54980050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
191 |
aaaattttagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||| |||||||||||||||| |||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
288 |
-atcttcaccctcaggtgga |
306 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 17645981 - 17645933
Alignment:
| Q |
110 |
tgttgggaaatg-cctgcataatttccctcctccgtgaactcaaaatag |
157 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatag |
17645933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 31725198 - 31725262
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactc-aaaataggcaatttagcggaaacg |
174 |
Q |
| |
|
|||||||||||| |||||||||| ||| ||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
31725198 |
tgttgggaaatgtctgcataattcaccttctccgtgaattcaaaaataggc-atttagcggaaacg |
31725262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 17645897 - 17645869
Alignment:
| Q |
189 |
acaaaattttagcgtggaaaaccttctca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctca |
17645869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 18556305 - 18556353
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagg |
158 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
18556305 |
tgttgggaaacacctacataatttgcctcctccatgaactcaaaatagg |
18556353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 110 - 324
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
209 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| |||||||||| |||||| ||| |||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
210 |
ccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
308 |
Q |
| |
|
|||||||| | ||||||||||| || |||||||| | ||| |||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
309 |
taactatgtatctcaa |
324 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaac-cacgggacccgtaggcctcttaaatctccactataataataatgggaata |
284 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||| ||||||||| |||||| || || |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 126 - 359
Target Start/End: Original strand, 26514 - 26752
Alignment:
| Q |
126 |
cataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctc-atgtgagt |
224 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
26514 |
cataatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaat--aacacaacaaaattttagggtggaaaaccttttcaatgtgagt |
26611 |
T |
|
| Q |
225 |
aaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgta |
318 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||| |||||| |||| |||| | |||||||| | || |||||| ||||||| || |||| | | |
|
|
| T |
26612 |
aaggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatc |
26711 |
T |
|
| Q |
319 |
tctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26712 |
tctcaatttgtaaggaacactctcacaaattggctcactat |
26752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 110 - 359
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
199 |
agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
293 |
Q |
| |
|
|||||||||||||||||| || |||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
294 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 108 - 359
Target Start/End: Complemental strand, 36167815 - 36167547
Alignment:
| Q |
108 |
tatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaa-----------aatgacacacaacaaaatt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||| |
|
|
| T |
36167815 |
tatgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca--ctagcggaaacgtgaaatataaacgtaatgacaca-aagagaatt |
36167719 |
T |
|
| Q |
197 |
ttagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atct |
291 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| | || |
|
|
| T |
36167718 |
ttagcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaact |
36167620 |
T |
|
| Q |
292 |
tcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
||||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167619 |
tcacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 303
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
| Q |
115 |
ggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggca--ctagcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
209 |
accttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt |
303 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||| |||| | ||| ||||||| | ||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt |
18951326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 18116885 - 18116930
Alignment:
| Q |
111 |
gttgggaaatgcctgcataatttccctcctccgtgaactcaaaata |
156 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||| |||||| |
|
|
| T |
18116885 |
gttgggaaatgcctgcataatttacctcgtctgtgaacttaaaata |
18116930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 306
Target Start/End: Original strand, 4842648 - 4842857
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca--ctagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
199 |
agcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
293 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| ||||||||| |||||| | ||||||||||| | ||||||||||| ||||| ||||||||| | |||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaacttc |
4842844 |
T |
|
| Q |
294 |
accctcaggtgga |
306 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
4842845 |
acccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 359
Target Start/End: Original strand, 25857130 - 25857395
Alignment:
| Q |
109 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat-----------gacacacaacaaaattt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||| |||| |||||| | ||||| |
|
|
| T |
25857130 |
atgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aattt |
25857224 |
T |
|
| Q |
198 |
tagcgtggaaaaccttctca-tgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
293 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
25857225 |
tagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
25857324 |
T |
|
| Q |
294 |
accctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
||| | ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857325 |
acctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 110 - 359
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
202 |
gtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
296 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
297 |
ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
|| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 306
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
191 |
aaaattttagcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||||||||||| |||||| | ||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
288 |
-atcttcaccctcaggtgga |
306 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 8252797 - 8252853
Alignment:
| Q |
313 |
tatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
369 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252797 |
tatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
184 |
acacaacaaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaa |
282 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| || |||||| ||||||||||||| ||||| | | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
283 |
tacaa-atcttcaccctcaggtg |
304 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 306
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctc-atgtgagtaa-ggaaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-a |
288 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| || ||||||||||||||| | | ||||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
289 |
tcttcaccctcaggtgga |
306 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctc-atgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 24379279 - 24379329
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
160 |
Q |
| |
|
|||||| ||||| || ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24379279 |
tgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggca |
24379329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 109 - 306
Target Start/End: Complemental strand, 2937 - 2727
Alignment:
| Q |
109 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat-----------gacacacaacaaaattt |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||| || | ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
2937 |
atgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
2841 |
T |
|
| Q |
198 |
tagcgtggaaaaccttctc-atgtgagtaagg--aaaaaccacgggacccgtaggcctcttaaatc-tccactataataataatgggaatacaa-atctt |
292 |
Q |
| |
|
||||||||||||||||||| ||||||| |||| |||||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
2840 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
2741 |
T |
|
| Q |
293 |
caccctcaggtgga |
306 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
2740 |
cacccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 359
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcaatttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
198 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
199 |
agcgtggaaaaccttctca-tgtgagtaagg-aaaaaccacgggacccgtaggcctcttaaatc---tccactataataataatgggaatacaa-atctt |
292 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
293 |
caccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
359 |
Q |
| |
|
|||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 304
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa-at |
289 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||||||| |||||||||| | | ||||||||| || |||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
290 |
cttcaccctcaggtg |
304 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
191 |
aaaattttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
287 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||| ||||||||| |||||||||| || || ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 25002905 - 25002947
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaa |
154 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
25002905 |
tgttgggaaatgc-tgcataatttccct-ctccgtgaactcaaaa |
25002947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 342217 - 342267
Alignment:
| Q |
110 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggca |
160 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggca |
342267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 342306 - 342404
Alignment:
| Q |
193 |
aattttagcgtggaaaaccttctca-tgtgagtaa-ggaa-aaaccacgggacccgtaggcctcttaaatct-ccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| || |||| ||||||||||| || | ||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
342306 |
aattttagcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
195 |
ttttagcgtggaaaaccttctca-tgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaa |
287 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||| |||||||||||||| | ||||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 11876198 - 11876118
Alignment:
| Q |
26 |
tcttggattctgggtgcagctgaaagaagacgttatgatgagcgattggagcgtagaacgtctcagtgatgaacaagttgt |
106 |
Q |
| |
|
|||||||||| ||||| ||||| |||| || |||||||||||||||||||| || ||| ||||| ||||||||||||||| |
|
|
| T |
11876198 |
tcttggattcagggtgaagctggaagacgaggttatgatgagcgattggagtgtcgaaaatctcaatgatgaacaagttgt |
11876118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 37038112 - 37038076
Alignment:
| Q |
124 |
tgcataatttccctcctccgtgaactcaaaataggca |
160 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37038112 |
tgcataatttctctcctccgtgaactcaaaataggca |
37038076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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