View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21501_high_1 (Length: 494)
Name: NF21501_high_1
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21501_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 214 - 328
Target Start/End: Complemental strand, 29805761 - 29805645
Alignment:
| Q |
214 |
atcgtgtatataactaattttctcatgtgaatgaga--atacgaagataaatgagacttctattttgctttatacacatccttgatgcttgaaaagcctc |
311 |
Q |
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| T |
29805761 |
atcgtgtatataactaattttctcatgtgaatgagagaataggaggataaatgagacttctattttgctttatacacatccttgatgcttgaaaagcctc |
29805662 |
T |
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| Q |
312 |
taaaaaatggcatttca |
328 |
Q |
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| T |
29805661 |
taaaaaatggcatttca |
29805645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 483
Target Start/End: Complemental strand, 29805654 - 29805519
Alignment:
| Q |
358 |
tggcatttcatgtaagtatattcctt--------atatttgcattgattaaaatttgaaattagttt--aaatttaagtagttctaattgttgtcatcta |
447 |
Q |
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| T |
29805654 |
tggcatttcatgtaagtatattcctttaacccttatatttgcattgattaaaatttgaaattagtttttaaatttaagtagttctaattgttgtcatcta |
29805555 |
T |
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| Q |
448 |
ttatatgtttattttcatccttttattttcagtatt |
483 |
Q |
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| T |
29805554 |
ttatatgtttattttcatccttttattttcaatatt |
29805519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 29805935 - 29805861
Alignment:
| Q |
93 |
cacacatatcttagactattaatttgtttatgtggaggatagagactcgggttactctacgataaagaatgtttg |
167 |
Q |
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| T |
29805935 |
cacacatatcttagactattcatttgtttatgtggaggatagagacttgggttactctacgataaagaatgtttg |
29805861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 29805996 - 29805961
Alignment:
| Q |
30 |
acctcttgaatggtactattcaattatgtattatga |
65 |
Q |
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| T |
29805996 |
acctcttgaatggtactattcaattatgtattatga |
29805961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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