View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21501_high_10 (Length: 300)
Name: NF21501_high_10
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21501_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 54988351 - 54988061
Alignment:
| Q |
1 |
ctatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattgatcaacagtaacatcgccgtt |
100 |
Q |
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| T |
54988351 |
ctatacataaacacttggaaataaataggatgtgcagacaattagatattatgatgtgtaccagataccgatgatattgatcaacagtaacatcaccgtt |
54988252 |
T |
|
| Q |
101 |
acttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctagaagacactgaaatgttgttatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54988251 |
acttccatcatgagtactacctgcaaaatatatatggtattgaattaaagtattcaagtatgaaaaattgatatctagaagacacggaaatgttgttatc |
54988152 |
T |
|
| Q |
201 |
atgacctggtttatgagtgaagacatcccagtcgctcaaacctttgccatcactcaagtaagcaccttcatactataatattaagtataat |
291 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54988151 |
atgacctggtttatgagtgaagacatcccagttgctcaaacctttgccatcactcaagtaagcaccttcatactataatattaagtttaat |
54988061 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 7918865 - 7918832
Alignment:
| Q |
241 |
cctttgccatcactcaagtaagcaccttcatact |
274 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
7918865 |
ccttttccatcactcaagtaagcaccttcatact |
7918832 |
T |
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