View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21501_high_3 (Length: 352)
Name: NF21501_high_3
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21501_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 32135552 - 32135312
Alignment:
| Q |
12 |
cacagacaacactgaatctcttctgtacatgaagcaagtagcaatagtaagaaaacgcacatgcaatcaaagattcactactactgtctactccacttca |
111 |
Q |
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| T |
32135552 |
cacagacaacactgaatctcttctgtacatgaagcaagtagcaatagtaagaaaacgcacatgcaatcaaagattcactactactgtctactccacttca |
32135453 |
T |
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| Q |
112 |
tcaaatcatatccaaaaagtgaccaaaatatctttcacccttgtccccactacacactagtcctaccttccttccgacctacattacattactcactttc |
211 |
Q |
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| T |
32135452 |
tcaaatcatatccaaaaagtgaccaaaatatctttcacccttgtccccactacacactagtcctaccttccttccgacctacattacattactcactttc |
32135353 |
T |
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| Q |
212 |
ctcatgcttatcatgtgccatgcctatgcttatgcatcttc |
252 |
Q |
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| T |
32135352 |
ctcatgcttatcatgtgccatgcctatgcttatgcatcttc |
32135312 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 21615388 - 21615352
Alignment:
| Q |
316 |
tatttcatatctttaaaactgtaatataagttcaatc |
352 |
Q |
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| T |
21615388 |
tatttcatatctttaaaactgtaatataagttcaatc |
21615352 |
T |
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