View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21501_high_4 (Length: 341)

Name: NF21501_high_4
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21501_high_4
NF21501_high_4
[»] chr7 (1 HSPs)
chr7 (14-331)||(19806432-19806743)
[»] chr2 (27 HSPs)
chr2 (122-333)||(39136173-39136384)
chr2 (1-134)||(39136016-39136149)
chr2 (22-329)||(39474250-39474560)
chr2 (190-330)||(39458169-39458309)
chr2 (144-331)||(39422460-39422647)
chr2 (144-331)||(39416343-39416530)
chr2 (234-331)||(39129487-39129584)
chr2 (144-331)||(39488161-39488348)
chr2 (2-129)||(39422722-39422849)
chr2 (2-136)||(39416559-39416693)
chr2 (233-314)||(39601994-39602075)
chr2 (229-331)||(39151897-39151999)
chr2 (244-330)||(39123536-39123622)
chr2 (228-298)||(44623617-44623687)
chr2 (230-302)||(39214925-39214997)
chr2 (230-306)||(39450499-39450575)
chr2 (190-304)||(27154981-27155095)
chr2 (233-302)||(39382213-39382282)
chr2 (234-311)||(39495534-39495611)
chr2 (230-302)||(39199482-39199554)
chr2 (230-302)||(39399013-39399085)
chr2 (230-301)||(39220162-39220233)
chr2 (243-302)||(39391666-39391725)
chr2 (236-278)||(39479182-39479224)
chr2 (230-300)||(44614473-44614543)
chr2 (242-302)||(39161102-39161162)
chr2 (242-302)||(39208032-39208092)
[»] chr8 (2 HSPs)
chr8 (229-300)||(44951384-44951455)
chr8 (23-59)||(32984770-32984806)
[»] chr5 (1 HSPs)
chr5 (243-302)||(33559636-33559695)
[»] chr6 (1 HSPs)
chr6 (234-272)||(16112428-16112466)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 19806432 - 19806743
Alignment:
Q  14 ggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctcc 113  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19806432 ggtttcataagaagaggcatacaactacactgccagtcaagagggtatccgatgtcaacaattccttgtgtggttcgatgaagaaatccaaggtgtctcc 19806531  T
Q  114 aacaacatatgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggat 213  Q
    |||| |||||||||||| |   | |      |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19806532 aacaccatatgatgatgttcctgcc------atgtcaactgataaatcattttccacactcaaagaagaacttgtgttggtagaaaaatcatttgaggat 19806625  T
Q  214 atcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaatta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19806626 atcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggattgctgcgaagatcttgaaaataagaaaaaggaaatta 19806725  T
Q  314 gggatgttggaagaatta 331  Q
    |  ||||||| |||||||    
T  19806726 gttatgttgggagaatta 19806743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 122 - 333
Target Start/End: Original strand, 39136173 - 39136384
Alignment:
Q  122 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136173 atgatgatgatgacgacgacgacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaag 39136272  T
Q  222 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39136273 caagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgtt 39136372  T
Q  322 ggaagaattatc 333  Q
    ||||||||||||    
T  39136373 ggaagaattatc 39136384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 39136016 - 39136149
Alignment:
Q  1 gctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39136016 gctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattccttgtgtggttcgatgaagaaat 39136115  T
Q  101 ccaaggtgtctccaacaacatatgatgatgatga 134  Q
    ||||||||||||||||| ||||||||||||||||    
T  39136116 ccaaggtgtctccaacaccatatgatgatgatga 39136149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 39474560 - 39474250
Alignment:
Q  22 aagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatccaaggtgtctccaacaacat 121  Q
    |||||||||| ||| |  |||||| | |||||||||||||| ||| |||||| ||| ||||| |||| ||||||||||||||||||||| |||||| |||    
T  39474560 aagaagaggggtactatcacactgcctgttaagagggtatttgataacaacagttccttgtgcggtttgatgaagaaatccaaggtgtccccaacatcat 39474461  T
Q  122 atgatgatgatgacgacgac---gacatgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcag 218  Q
    ||||||||||||| || |     | ||||||||| ||||||||||||||| |||||||  || ||||||  || |||||||||||||||||||||  |      
T  39474460 atgatgatgatgatgatgttcctgccatgtcaacggataaatcattttcctcactcaagaaagaacttgcatttgtagaaaaatcatttgaggattgcca 39474361  T
Q  219 aagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggat 318  Q
    ||| | ||| ||| ||||| ||  ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||  ||    
T  39474360 aaggacgacgcaaatagaaaaggagagattgcattccataaagagagatattgaggagtgctccgaagagcttgaaaataagaaaaagaaaattagtcat 39474261  T
Q  319 gttggaagaat 329  Q
    |||||||||||    
T  39474260 gttggaagaat 39474250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 39458169 - 39458309
Alignment:
Q  190 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 289  Q
    ||||||||||||||||||||||||  || ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  39458169 ttggtagaaaaatcatttgaggattgcaaaaggacgagacaagtagaagagaagagattgcagtccataaagagagatattgaggagtgctgcaaagatc 39458268  T
Q  290 ttgaaaataagaaaaaggaaattagggatgttggaagaatt 330  Q
    ||||||| ||||||||||||| ||   ||||||||||||||    
T  39458269 ttgaaaacaagaaaaaggaaactatttatgttggaagaatt 39458309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 331
Target Start/End: Complemental strand, 39422647 - 39422460
Alignment:
Q  144 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagc-aagacacaagtagaagagag 242  Q
    |||||||| ||||  |||||||||| |||||||| || ||||||  || |||||||||||||||||||| ||  ||||  || | | ||||||||||||     
T  39422647 catgtcaattgatctatcattttcctcactcaaaaaacaacttgcatttgtagaaaaatcatttgagga-atgtgaagggaaaagagaagtagaagagaa 39422549  T
Q  243 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 331  Q
    || |||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||| ||||||||||||||||    
T  39422548 gatattgcagtccataaagagagatattgagaagtgctgcaaagagctggaaaataagaaaaaggaaattagtgatgttggaagaatta 39422460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 144 - 331
Target Start/End: Complemental strand, 39416530 - 39416343
Alignment:
Q  144 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 243  Q
    ||||||||||||||||||| |||||  ||||||| || ||||||  ||  |||||||||||||||||||   ||||||  | |  ||||||||| ||| |    
T  39416530 catgtcaactgataaatcaatttccgaactcaaaaaagaacttgcatttatagaaaaatcatttgaggaacgcagaagggacatgcaagtagaaaagaag 39416431  T
Q  244 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 331  Q
    |||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||  |||||||||||||||    
T  39416430 agattgcattccataaagagagatattgaggagtgctgcagagaacttgaaaataagcaaaaggaaattagttatgttggaagaatta 39416343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 39129487 - 39129584
Alignment:
Q  234 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 331  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||||||||||||||| |||| |||||||||||    
T  39129487 agaagagaagagattgcagtccataaagagagatattgaggagtgctccaaagagcttgaaaatatgaaaaaggaaattagtgatgctggaagaatta 39129584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 144 - 331
Target Start/End: Complemental strand, 39488348 - 39488161
Alignment:
Q  144 catgtcaactgataaatcattttccacactcaaagaaaaacttgtgttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagagg 243  Q
    ||||||| |||| ||||||||||||   || ||| || ||||||  ||||||||||  |||||||||||   || ||| || |  |||||||||||| ||    
T  39488348 catgtcatctgagaaatcattttccttgctgaaaaaagaacttgcattggtagaaacctcatttgaggaatgcaaaaggaaaaggcaagtagaagagggg 39488249  T
Q  244 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatta 331  Q
    ||| ||||||| |||||||||||| ||||||||||||   |||| ||||||||||||||||||||||||||   ||||||||||||||    
T  39488248 agactgcagtctataaagagagatgttgaggagtgctctaaagagcttgaaaataagaaaaaggaaattagttgtgttggaagaatta 39488161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 39422849 - 39422722
Alignment:
Q  2 ctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatc 101  Q
    |||| ||||||||||||| ||||||||||||||| |  |||||| | ||||||| |||||  ||| |||||| ||| ||||| |||| ||||||||||||    
T  39422849 ctttgtcagcaaggtttcctaagaagagggatactatcacactgcctgttaagaaggtatctgataacaacagttccttgtgcggtttgatgaagaaatc 39422750  T
Q  102 caaggtgtctccaacaacatatgatgat 129  Q
    ||||||||| || ||| |||||||||||    
T  39422749 caaggtgtccccgacaccatatgatgat 39422722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 39416693 - 39416559
Alignment:
Q  2 ctttatcagcaaggtttcataagaagagggatacaactacactgtcagttaagagggtattcgatgacaacaattctttgtgtggttcgatgaagaaatc 101  Q
    |||| ||||||||||||  ||||||||||| | | ||||||||| || ||||||||| ||| ||| |||||||||| || ||| ||| ||||||||||||    
T  39416693 ctttgtcagcaaggtttgctaagaagaggggtgctactacactgccaattaagagggcatttgataacaacaattccttatgttgtttgatgaagaaatc 39416594  T
Q  102 caaggtgtctccaacaacatatgatgatgatgacg 136  Q
    ||||||||| || | | ||||||||||| ||||||    
T  39416593 caaggtgtccccgaaaccatatgatgataatgacg 39416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 39601994 - 39602075
Alignment:
Q  233 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattag 314  Q
    |||||||||  ||||||||||||||||||| ||||||| |||||||| || |||| ||||||||||||||||||||||||||    
T  39601994 tagaagagaatagattgcagtccataaagatagatattcaggagtgccgcaaagagcttgaaaataagaaaaaggaaattag 39602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 39151897 - 39151999
Alignment:
Q  229 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaa 328  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||  ||| | |||| |||||||||||||||||||||||||    |||||||||||    
T  39151897 caagtagaagagaagagactgcagtcaataaagagaaatattgaggaacgctccaaagagcttgaaaataagaaaaaggaaattacctgtgttggaagaa 39151996  T
Q  329 tta 331  Q
    |||    
T  39151997 tta 39151999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 39123536 - 39123622
Alignment:
Q  244 agattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaattagggatgttggaagaatt 330  Q
    |||||||| |||||| ||||||||||||||| ||||| | ||||||||||||||| |||||||||||| ||  |||||| |||||||    
T  39123536 agattgcactccatacagagagatattgaggggtgctccaaagatcttgaaaatatgaaaaaggaaatgagttatgttgaaagaatt 39123622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 44623617 - 44623687
Alignment:
Q  228 acaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaata 298  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||| || |||||||    
T  44623617 acaagtagaagagaggcgattgcggtctataaagagagatattgagaagtgctgcgaagagctagaaaata 44623687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 39214925 - 39214997
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    ||||||| |||| |||||||||||||||||||||| || |||||||||||||  |||| ||||||||||||||    
T  39214925 aagtagaggagaagagattgcagtccataaagagatatgttgaggagtgctgtaaagagcttgaaaataagaa 39214997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 39450499 - 39450575
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaag 306  Q
    |||||||||| | ||||||||||||||| |||| |||||||||||| |||||| |||| ||| ||||||||||||||    
T  39450499 aagtagaagaaaagagattgcagtccatcaagacagatattgaggactgctgcaaagagcttcaaaataagaaaaag 39450575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 27155095 - 27154981
Alignment:
Q  190 ttggtagaaaaatcatttgaggatatcagaagcaagacacaagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatc 289  Q
    ||||||||||||| |||||| ||  ||| ||  || | ||||| |||||||   ||||||||||||||||||||||||||||||||||||| | |||| |    
T  27155095 ttggtagaaaaattatttgaagaattcaaaaagaaaagacaagaagaagaggaaagattgcagtccataaagagagatattgaggagtgctccaaagagc 27154996  T
Q  290 ttgaaaataagaaaa 304  Q
    ||| ||||| |||||    
T  27154995 ttggaaatatgaaaa 27154981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 39382282 - 39382213
Alignment:
Q  233 tagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    ||||||||| |||||| ||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39382282 tagaagagaagagattacagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 39495611 - 39495534
Alignment:
Q  234 agaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaaaaaggaaat 311  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||| | |||| |||| |||||  |||||||||||    
T  39495611 agaagaggagagattgcagtccataaagagagatattgaggagcgctccaaagagcttggaaatataaaaaaggaaat 39495534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 39199554 - 39199482
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    |||| |||||||  ||||||||||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||    
T  39199554 aagttgaagagaaaagattgcagtccataaagagagatactgaagagtgctgcaaagagcttcaaaataagaa 39199482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 39399085 - 39399013
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||  |||| |||| ||| |||||    
T  39399085 aagtagaagagaagagattgcagtccataaagagagatattgaagactgctggaaagaacttggaaaaaagaa 39399013  T

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Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 39220162 - 39220233
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataaga 301  Q
    |||| |||||||| ||||| ||||||||||||||||| | ||| ||||||||| |||||||| ||| |||||    
T  39220162 aagttgaagagagaagattacagtccataaagagagaaactgaagagtgctgcaaagatcttcaaattaaga 39220233  T

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Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 39391725 - 39391666
Alignment:
Q  243 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    |||||||| ||||||||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  39391725 gagattgctgtccataaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 39391666  T

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Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 39479224 - 39479182
Alignment:
Q  236 aagagaggagattgcagtccataaagagagatattgaggagtg 278  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  39479224 aagagaagagattgcagtccataaagagagatattgaagagtg 39479182  T

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Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 44614473 - 44614543
Alignment:
Q  230 aagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 300  Q
    ||||||||||||||  ||||| ||| |||||||||||||||||| | |||||| |||| || |||||||||    
T  44614473 aagtagaagagaggcaattgcggtctataaagagagatattgagaaatgctgcaaagagctagaaaataag 44614543  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 39161102 - 39161162
Alignment:
Q  242 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39161102 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39161162  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 39208092 - 39208032
Alignment:
Q  242 ggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    ||||||||||||||||  ||| ||||||||| || |||||| |||| |||||| |||||||    
T  39208092 ggagattgcagtccatccagaaagatattgaagaatgctgcaaagagcttgaagataagaa 39208032  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 44951455 - 44951384
Alignment:
Q  229 caagtagaagagaggagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataag 300  Q
    |||||||||||||||  ||||| | | ||||||||||||||| || ||||||||||||| ||||||||||||    
T  44951455 caagtagaagagaggcaattgcggccgataaagagagatattaagaagtgctgcgaagagcttgaaaataag 44951384  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 32984770 - 32984806
Alignment:
Q  23 agaagagggatacaactacactgtcagttaagagggt 59  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32984770 agaagagggatactactacactgtcagttaagagggt 32984806  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 33559636 - 33559695
Alignment:
Q  243 gagattgcagtccataaagagagatattgaggagtgctgcgaagatcttgaaaataagaa 302  Q
    ||||||||||||  |||||| ||||||||| ||||||||| |||| |||||| |||||||    
T  33559636 gagattgcagtctgtaaagaaagatattgaagagtgctgcaaagagcttgaagataagaa 33559695  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 16112428 - 16112466
Alignment:
Q  234 agaagagaggagattgcagtccataaagagagatattga 272  Q
    |||||||| || |||||||||||||||||||||||||||    
T  16112428 agaagagaagaaattgcagtccataaagagagatattga 16112466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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