View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21501_high_7 (Length: 313)
Name: NF21501_high_7
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21501_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 105 - 306
Target Start/End: Complemental strand, 34366913 - 34366710
Alignment:
| Q |
105 |
aatgctaactaccctaacttcctaatacttgaagaaatat--tcaacaacatgttcagtagaaattaaacatgagaagcaaagaattgacataaaatctt |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34366913 |
aatgctaactaccctaactttctaatacttgaagaaatatattcaacaacatgttcagtagaaattaaacatgagaagcaaaaaattgacataaaatctt |
34366814 |
T |
|
| Q |
203 |
acctgaagcagcacagcacttcaagatcagaaatgagatgcacaagaaattacagtcgtggacaactgacatgcacaataaattacaaatttttagaata |
302 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
34366813 |
acctgaagcagcccagcacttcaagatcagaaatgagatgcacaagaaattacagtcgtggacaactgacatgcacaataaattacaaaattttagatta |
34366714 |
T |
|
| Q |
303 |
atct |
306 |
Q |
| |
|
|||| |
|
|
| T |
34366713 |
atct |
34366710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 34366978 - 34366910
Alignment:
| Q |
1 |
ttatcaatatttgataaagggaaaaaagaaataaaataccaagtacagataatggatgccattataatg |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34366978 |
ttatcaatatttgataaagggaaaaaagaaataaaataccaagtacagataatggatgctattataatg |
34366910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University