View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21501_high_9 (Length: 303)
Name: NF21501_high_9
Description: NF21501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21501_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 41725987 - 41726277
Alignment:
| Q |
1 |
ataggtgaccttgagggaacattggctcgtgaaggaatgatatgcttgagaaggtagcaataatggaacttaaaagggatcacattaatggttctttcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41725987 |
ataggtgaccttgagggaacattggctcgtgaaggaatgatatgcttgagaaggtagcaataatggaacttaaaagggatcacattaatggttctttcct |
41726086 |
T |
|
| Q |
101 |
caagtgtttatttgtctatactctatagtctatatatagtatacttgttactgcagttaataacatcaatttgtatatggaagttgcacaagaaaataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41726087 |
caagtgtttatttgtctatactctatagtctatatatagtatacttgttactgcagttaataacatcaatttgtatatggaagttgcacaagaaaataat |
41726186 |
T |
|
| Q |
201 |
tcaaatgtgactggtgaaaac-nnnnnnnnctaaacagtgaataagacttgttattttcatgtctacaaagtcaacaatgttattggttct |
290 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41726187 |
tcaaatgtgactggtgaaaacaaaaaaaaactaaacagtgaataagacttgttattttcatgtctacaaagtcaacaatgttattggttct |
41726277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University