View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21502_high_2 (Length: 445)
Name: NF21502_high_2
Description: NF21502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21502_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 21769313 - 21768880
Alignment:
| Q |
1 |
atcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccagn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769313 |
atcttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccaga |
21769214 |
T |
|
| Q |
101 |
nnnnnncacggaaagactaaacttacagcataataatgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769213 |
aaaaaacacggaaagactaaacttacagcataataatgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaa |
21769114 |
T |
|
| Q |
201 |
tggaaccagaaactttgcctatggctaaaagcatcttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacagcatttgcagttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769113 |
tggaaccagaaactttgcctatggctaaaagcatcttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacagcatttgcagttat |
21769014 |
T |
|
| Q |
301 |
aacctaattagacattgaaagttgcataaaggaattattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21769013 |
aacctaattagacattgaaagttgcataaaggaattattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaa |
21768914 |
T |
|
| Q |
401 |
taataaaaaggaatttggatcaacttctgatgat |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21768913 |
taataaaaaggaatttggatcaacttctgatgat |
21768880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 430
Target Start/End: Original strand, 32923656 - 32924077
Alignment:
| Q |
3 |
cttccatcaaacgcccaagtcaaactggtaacctgaaggatgtaaaaatgcagaaatcaatagaggaatacattctgaagtcttcaaccaactccagnnn |
102 |
Q |
| |
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|||||| |||| |||||||| || | |||||||||||||| |||||||| ||||||||||||||||||||| || ||||||||||||| ||||| |
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| T |
32923656 |
cttccaccaaatgcccaagttaatccagtaacctgaaggatataaaaatggagaaatcaatagaggaatacaacctcaagtcttcaaccatctccaaaa- |
32923754 |
T |
|
| Q |
103 |
nnnncacggaaagactaaacttacagcataataatgtgcatcatatgagccaagcttatcaaattccctagaggatatgtcacatagccatatctcaatg |
202 |
Q |
| |
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| ||| | | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||| |
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| T |
32923755 |
-----aaggaggggatgaacttacaccataataatgtgcatcatatgacccaagcttatcaaattccctagaagatatgtcgcatatccatatctcaatg |
32923849 |
T |
|
| Q |
203 |
gaaccagaaactttgcctatggctaaaagcatcttggaggggtactgaacatgcacagttactgaaagtactgaaactgggacagcatttgcagttataa |
302 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
32923850 |
gaaccagaaactttgcctatggctaagagcatcttggagggatattgaacatgcacagttactgaaagtaccgaaactgggacagcattgacagttataa |
32923949 |
T |
|
| Q |
303 |
cctaattagacattgaaagttgcataaaggaattattcacagagaagggatagaaatgaaaagaaatgcaaaaaataagtgagatgtacctccttcaata |
402 |
Q |
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|||||||||| ||| | |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
32923950 |
cctaattagaaattaagagttgcatgaaggaatcattcacaaagaagggatagaaatgaaaagaaatgcaaaaattaagtgggatgtacctccttcaata |
32924049 |
T |
|
| Q |
403 |
ataaaaaggaatttggatcaacttctga |
430 |
Q |
| |
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| || |||||| || ||||||||||||| |
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| T |
32924050 |
acaagaaggaagtttgatcaacttctga |
32924077 |
T |
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