View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21502_high_3 (Length: 257)
Name: NF21502_high_3
Description: NF21502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21502_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 33861549 - 33861447
Alignment:
| Q |
13 |
atatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctatc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33861549 |
atatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttttatc |
33861450 |
T |
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| Q |
113 |
ata |
115 |
Q |
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||| |
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| T |
33861449 |
ata |
33861447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 33861449 - 33861385
Alignment:
| Q |
187 |
ataatgaaaatagagagtgtgttgatatacccccactttccttagaattcttgccttgctagtta |
251 |
Q |
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| T |
33861449 |
ataatgaaaatagagagtgtgttgatatacccccactttccttagaattcttgccttgctagtta |
33861385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 7533766 - 7533679
Alignment:
| Q |
24 |
attagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctat |
111 |
Q |
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| T |
7533766 |
attatacactataaaaagagtttattttaatcttattttccaaaaatcttttatcataatatatttaaaaattgatacctctttctat |
7533679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 9244869 - 9244937
Alignment:
| Q |
21 |
aatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgt |
89 |
Q |
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| T |
9244869 |
aatattggacactataaaaagatattattttaatctgatttactaaaactatttgatcatagtatatgt |
9244937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 33478487 - 33478570
Alignment:
| Q |
12 |
aatatgaagaatattagacattataaaaagagtttatattaatcttatttaccaaaagtattttatcatagtatatgttaaaat |
95 |
Q |
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|||| ||| ||||||| ||| |||| || || ||||| |||||| ||||| |||||| || ||||||||| ||||||||||||| |
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| T |
33478487 |
aataggaacaatattatacactatataatgaatttattttaatcctatttgccaaaaatactttatcataatatatgttaaaat |
33478570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 32526983 - 32527044
Alignment:
| Q |
50 |
ttaatcttatttaccaaaagtattttatcatagtatatgttaaaattgatatatctttctat |
111 |
Q |
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|||||||||||| ||||| |||| |||||||||||||| |||||||| |||| ||||||| |
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| T |
32526983 |
ttaatcttatttgtcaaaaacatttaatcatagtatatgtcaaaattgaaatatatttctat |
32527044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 50798446 - 50798486
Alignment:
| Q |
71 |
attttatcatagtatatgttaaaattgatatatctttctat |
111 |
Q |
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|||||||||| ||||||||||||||||||| ||||||||| |
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| T |
50798446 |
attttatcatcatatatgttaaaattgatatctctttctat |
50798486 |
T |
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