View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21502_low_1 (Length: 501)
Name: NF21502_low_1
Description: NF21502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21502_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 33861340 - 33860847
Alignment:
| Q |
1 |
tccttgtacattatcaaagttcgaaacagatttgattgctttctttgttatgatggtgatttatatgtataattatctaaatgatcatgagaattggaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33861340 |
tccttgtacattatcaaagttcgaaacagatttgattgctttctttgttatgatggtgatttatatgtataaatatctaaatgatcatgagaattggaga |
33861241 |
T |
|
| Q |
101 |
ttgaacataatagccttcatttattt------------cgaaatactttattccatttcaagactacatcagtgaactaatgcagagacataactcatgt |
188 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861240 |
ttgaacataatagccttcatttatttattaatttatttcgaaatacttt---ccatttcaagactacatcagtgaactaatgcagagacataactcatgt |
33861144 |
T |
|
| Q |
189 |
tgccaaggtggttttctcacaaccatcgtgcacacatgctaagacatctctatagtccctggaaattgtaaaagagtcataaacctttccatcactactt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861143 |
tgccaaggtggttttctcacaaccatcgtgcacacaggccaagacatctctatagtccctggaaattgtaaaagagtcataaacctttccatcactactt |
33861044 |
T |
|
| Q |
289 |
ttcttgtactcaaacaagagatatgagtgattgaatgctgtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaataggaggtgctgttg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861043 |
ttcttgtactcaaacaagagatatgagtgattgaatgctgtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaataggaggtgctgttg |
33860944 |
T |
|
| Q |
389 |
tgaagtccgacaagtgacttccccctccgccgacaacaacatgaattgttccattcacagtgccagagtaatgagttttttcattgttcacacattg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33860943 |
tgaagtccgacaagtgacttccccctccgccgacaacaacatgaattgttccattcacagtgccagagtaatgagttttttcattgttcacacattg |
33860847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 129 - 485
Target Start/End: Complemental strand, 33871540 - 33871184
Alignment:
| Q |
129 |
aaatactttattccatttcaagactacatcagtgaactaatgcagag-acataactcatgttgccaaggtggttttctcacaaccatcgtgcacacatgc |
227 |
Q |
| |
|
||||| |||||| |||||||||||||||||| | |||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||| || |
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| T |
33871540 |
aaatattttatttcatttcaagactacatcaa-gttctaatgtagactacataattcagagtgccaaggtggttttctcacaaccatcgtgcacacaggc |
33871442 |
T |
|
| Q |
228 |
taagacatctctatagtccctggaaattgtaaaagagtcataaacctttccatcactacttttcttgtactcaaacaagagatatgagtgattgaatgct |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33871441 |
caagacatctctatagtccctggaaattgtaaaagagtcataaacctttccatcactacttttcttgtactcaaacaagagatatgagtgattgaatgct |
33871342 |
T |
|
| Q |
328 |
gtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaataggaggtgctgttgtgaagtccgacaagtgacttccccctccgccgacaacaa |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
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|
| T |
33871341 |
gtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaataggaggtgctgttgtgaagtctgacaagtgacttccacctccgccaacaacaa |
33871242 |
T |
|
| Q |
428 |
catgaattgttccattcacagtgccagagtaatgagttttttcattgttcacacattg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| |
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|
| T |
33871241 |
catgaattgttccattcacagtgccagagtaatgagatttttctttattcacgcattg |
33871184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 176 - 485
Target Start/End: Complemental strand, 33876035 - 33875726
Alignment:
| Q |
176 |
acataactcatgttgccaaggtggttttctcacaaccatcgtgcacacatgctaagacatctctatagtccctggaaattgtaaaagagtcataaacctt |
275 |
Q |
| |
|
|||||||||| |||| ||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| || || || |
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|
| T |
33876035 |
acataactcaggttggcaaggtggttttcacacaaccatcgtgcacacaggccaagacatctctatagtccctggaaatggtaaaagagtcgtagacttt |
33875936 |
T |
|
| Q |
276 |
tccatcactacttttcttgtactcaaacaagagatatgagtgattgaatgctgtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaata |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |||| |||||||||||||||||| |
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|
| T |
33875935 |
tccatcactacttttcttgtactcaaacaagagatatgagtgattgaatgctgtcagtttgccaaaaccatagtctttgtctctgaaaatactccaaata |
33875836 |
T |
|
| Q |
376 |
ggaggtgctgttgtgaagtccgacaagtgacttccccctccgccgacaacaacatgaattgttccattcacagtgccagagtaatgagttttttcattgt |
475 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33875835 |
ggaggtgctgtggtgaagtctgacaagtgacttccacctccaccaacaacaacatgaattgttccattcacagtgccagagtaatgagatttttcattgt |
33875736 |
T |
|
| Q |
476 |
tcacacattg |
485 |
Q |
| |
|
|||| ||||| |
|
|
| T |
33875735 |
tcacgcattg |
33875726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 220 - 485
Target Start/End: Complemental strand, 42785440 - 42785175
Alignment:
| Q |
220 |
acacatgctaagacatctctatagtccctggaaattgtaaaagagtcataaacctttccatcactacttttcttgtactcaaacaagagatatgagtgat |
319 |
Q |
| |
|
|||||||| ||||||||| | || ||||| |||| ||||||||||||||||| |||||||| |||||||||||||| ||||| | ||| |||| |||| |
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|
| T |
42785440 |
acacatgccaagacatctttgtaatcccttgaaacggtaaaagagtcataaacatttccatcgctacttttcttgtattcaaagaggagggatgaatgat |
42785341 |
T |
|
| Q |
320 |
tgaatgctgtcagtttgacgaaaccgtagtctctgtccctgaaaatactccaaataggaggtgctgttgtgaagtccgacaagtgacttccccctccgcc |
419 |
Q |
| |
|
|||||||||||| ||||| || ||| |||| ||| ||| ||| ||||||| | |||| | || |||| | |||||||| ||||| |||| || |
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|
| T |
42785340 |
tgaatgctgtcaacttgacaaatccgaagtcatagtctctgtaaagactccaacttggagttacttggctgaaattggacaagtggcttcctgctcctcc |
42785241 |
T |
|
| Q |
420 |
gacaacaacatgaattgttccattcacagtgccagagtaatgagttttttcattgttcacacattg |
485 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||| | ||||| || ||||||||||| |
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|
| T |
42785240 |
aacaacaacatgaattgttccattcacaatgccggaataatgtgacttttctttattcacacattg |
42785175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 26412522 - 26412474
Alignment:
| Q |
257 |
taaaagagtcataaacctttccatcactacttttcttgtactcaaacaa |
305 |
Q |
| |
|
|||||||||| ||||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
26412522 |
taaaagagtcgtaaacttgtccatcactactcttcttgtactctaacaa |
26412474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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