View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21502_low_2 (Length: 449)

Name: NF21502_low_2
Description: NF21502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21502_low_2
NF21502_low_2
[»] chr4 (1 HSPs)
chr4 (40-433)||(52409487-52409880)
[»] chr3 (5 HSPs)
chr3 (110-433)||(7775835-7776158)
chr3 (334-431)||(15272482-15272579)
chr3 (109-194)||(15272719-15272804)
chr3 (109-194)||(40874221-40874306)
chr3 (334-431)||(40874446-40874543)
[»] chr8 (1 HSPs)
chr8 (24-336)||(14197321-14197631)
[»] chr1 (2 HSPs)
chr1 (106-195)||(6060147-6060236)
chr1 (10-72)||(6060085-6060147)
[»] chr5 (1 HSPs)
chr5 (124-433)||(23204788-23205097)
[»] chr6 (3 HSPs)
chr6 (109-194)||(11326051-11326136)
chr6 (334-431)||(11326276-11326373)
chr6 (109-194)||(13223891-13223976)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 40 - 433
Target Start/End: Original strand, 52409487 - 52409880
Alignment:
Q  40 gttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgggattgctggaatcatc 139  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||| ||||||  |  ||| || ||   ||||||||||| | ||||| |||||||| |    
T  52409487 gttgagaagtttgatgaggagggaatacctacaggaaaggttgctaaaatgttcaatagtggaggtatgtctttttctagtagagattgttggaatcacc 52409586  T
Q  140 ttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatcctaannnnnnnnatgc 239  Q
    ||||||||||  ||||||| |||||||   | ||||||||||||||||| || || ||||| |||| ||| |||| |||| |||| ||        |||     
T  52409587 ttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagctgtattcaacttttgtaagacaaagcaagctgaggatccaaattttttttatga 52409686  T
Q  240 aatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttggtgatgttgttacatttgat 339  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||| |||| | |||||||| ||| |  ||||||| ||||||||||||||||||    
T  52409687 aatacaatgtgatgatgaagatagaatgataaattttttttgggtggatgcaagatcgagattggcttataaggtttttggagatgttgttacatttgat 52409786  T
Q  340 acaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgctttgt 433  Q
    |||||||||||||||||||||||    ||||||||||| || ||    || |||||||||||||||||||| ||||||||||||||||||||||    
T  52409787 acaacatataaaaccaacaagtacctcatgccatttgctccttttgttgggttgaatcatcattttcaatctatcttatttggatgtgctttgt 52409880  T

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Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 110 - 433
Target Start/End: Complemental strand, 7776158 - 7775835
Alignment:
Q  110 ctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaa 209  Q
    ||||||||||| | ||||| |||||||| |||||||||||  ||||||| |||||||   | ||||||||||||| ||| || || ||||| |||| |||    
T  7776158 ctttttctagtagagattgttggaatcaccttagaaatcttcgaagaaggaatcttgtaattggagatgctcaagttgtattcaacttttgtaagacaaa 7776059  T
Q  210 acaagttgagaatcctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatat 309  Q
     |||| ||||||||| |         ||| |||||||||||||||||||||||||||||||||  | || |||||||||| |||| | |||||||| |||    
T  7776058 gcaagctgagaatccaatttttttttatgaaatacaatgtgatgatgaagatagaatgataaaaattttttgggtggatgcaagatcgagattggcttat 7775959  T
Q  310 caattttttggtgatgttgttacatttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaat 409  Q
     |  ||||||| |||||||||||||||||||||||||||||||||||||||||    ||||||||||| ||  |    || |||||||||||||||||||    
T  7775958 aaggtttttggagatgttgttacatttgatacaacatataaaaccaacaagtacctcatgccatttgctcctattgttgggttgaatcatcattttcaat 7775859  T
Q  410 ccatcttatttggatgtgctttgt 433  Q
    | ||||||||||||||||||||||    
T  7775858 ctatcttatttggatgtgctttgt 7775835  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 431
Target Start/End: Complemental strand, 15272579 - 15272482
Alignment:
Q  334 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgcttt 431  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||    
T  15272579 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgcttt 15272482  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 15272804 - 15272719
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  15272804 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 15272719  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 40874221 - 40874306
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  40874221 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 40874306  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 40874446 - 40874543
Alignment:
Q  334 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgcttt 431  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||    
T  40874446 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgcttt 40874543  T

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Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 14197631 - 14197321
Alignment:
Q  24 agcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctacagggaaagttgctacaatgtttcagggtgaagataatgctttttctagtcgg 123  Q
    ||||||||| | |||  ||||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||  |    
T  14197631 agcaactaataacctttttgagaa-tttgatgaa-aaggaatacatgcagggaaagttgctacaatgtttcatggtggagataatgctttttctagtgtg 14197534  T
Q  124 gattgctggaatcatcttagaaatctca----gaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgag 219  Q
    || ||||||||| |||||||| |||| |    |||||| | || |||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  14197533 gactgctggaat-atcttagacatcttaattagaagaaaacattttgacgtgggaaatgctcaagctgtctttaaattttgtaagcaaaaacaagttgag 14197435  T
Q  220 aatcctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttg 319  Q
    |||||  |        |||||||||  ||| ||||||||||| ||||||| ||||  || ||||||||| |||||||||||||| |||||  ||||||||    
T  14197434 aatcc--aatttttttatgcaatacggtgtcatgatgaagatggaatgat-aattctttttgggtggatagaagagcaagattgtcatattgattttttg 14197338  T
Q  320 gtgatgttgttacattt 336  Q
    |||||||||| ||||||    
T  14197337 gtgatgttgtaacattt 14197321  T

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Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 6060147 - 6060236
Alignment:
Q  106 aatgctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060147 aatgccttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaa 6060236  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 6060085 - 6060147
Alignment:
Q  10 aagaatatgactgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 72  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6060085 aagaaaatgattgcagcaactaaaagcctcgttgagaagtttgatgaagaaggagtacctaca 6060147  T

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Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 124 - 433
Target Start/End: Complemental strand, 23205097 - 23204788
Alignment:
Q  124 gattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaaattttgcaagaaaaaacaagttgagaatc 223  Q
    ||||| ||||||||||||||| ||||| ||   | |||||| ||||| |||||||||||||| || || || ||||| ||| |||||||||  ||||| |    
T  23205097 gattgttggaatcatcttagagatctccgatctaaaaatctggatgttggagatgctcaagcagtgttaaacttttgtaagcaaaaacaagcagagaacc 23204998  T
Q  224 ctaannnnnnnnatgcaatacaatgtgatgatgaagatagaatgataaatttcttctgggtggatggaagagcaagattggcatatcaattttttggtga 323  Q
    | ||        |||| || |||  |||| || | ||||||||||| ||||| || ||||| |||| |||  | || ||||| ||| | | |||||| ||    
T  23204997 caaatttcttttatgcgattcaagttgataatcatgatagaatgattaattttttttgggttgatgcaaggtcgaggttggcctataattattttggaga 23204898  T
Q  324 tgttgttacatttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttgga 423  Q
    ||||||||||||||||||||||||||| |  |||||||||  |||||||||||| || || || |||||||||||||||  ||| ||||| ||||| ||     
T  23204897 tgttgttacatttgatacaacatataagaagaacaagtatcttatgccatttgcgccatttactggattgaatcatcatcatcagtccattttattcggt 23204798  T
Q  424 tgtgctttgt 433  Q
    ||||||||||    
T  23204797 tgtgctttgt 23204788  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 11326051 - 11326136
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  11326051 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 11326136  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 431
Target Start/End: Original strand, 11326276 - 11326373
Alignment:
Q  334 tttgatacaacatataaaaccaacaagtatgatatgccatttgcacccttcaccggattgaatcatcattttcaatccatcttatttggatgtgcttt 431  Q
    ||||| || |||||||| || |||||||||  |||||||||||| || ||    ||||||||| |||||| |||||| || |||||||| ||||||||    
T  11326276 tttgacaccacatataagactaacaagtatagtatgccatttgccccgtttgttggattgaataatcattatcaatcaattttatttggttgtgcttt 11326373  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 13223976 - 13223891
Alignment:
Q  109 gctttttctagtcgggattgctggaatcatcttagaaatctcagaagaagaaatcttgatgtgggagatgctcaagctgtctttaa 194  Q
    ||||| |||| | ||||||| ||||||||| |||||| |||  |||||| |||| | || || ||||||||||||||||| |||||    
T  13223976 gctttctctaatagggattgttggaatcatgttagaagtcttcgaagaaaaaatttagacgttggagatgctcaagctgtttttaa 13223891  T

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