View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21503_high_10 (Length: 326)
Name: NF21503_high_10
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_10 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 592808 - 593137
Alignment:
| Q |
1 |
atattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
592808 |
atattaaaaggtaagggaaaaaatttaccttttgatattgttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaa |
592907 |
T |
|
| Q |
101 |
caacacagggaacagatggagtaacatttattctcttaattttctactcattagtgtt---actcatcagttctcattccagagctaaaattcttcactt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592908 |
caacacagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcactt |
593007 |
T |
|
| Q |
198 |
agaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
593008 |
agaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcg |
593107 |
T |
|
| Q |
298 |
-tatgtacagatcaccacaggtgttgccag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
593108 |
ttatgtacagatcaccacaggtgttgccag |
593137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 326
Target Start/End: Complemental strand, 579612 - 579284
Alignment:
| Q |
6 |
aaaaggtaagggaaaaaatttaccttttgatatt----gttaatactactttaaatttgaaaatgacaaattaatataaacacaaaatttctagaaaaac |
101 |
Q |
| |
|
|||||| ||||||||||| || |||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
579612 |
aaaaggcaagggaaaaaagtttccttttaatgttaatagttaatactactttaaatttgaaaatgacaaattaatagaaacacaaaatttctagaaaaac |
579513 |
T |
|
| Q |
102 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgtta---ctcatcagttctcattccagagctaaaattcttcactta |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
579512 |
aacacagggaacagatggagtaacatttattctcttaattttctactcattagtgttataactcatcagttctcattccagagctaaaattcttcactta |
579413 |
T |
|
| Q |
199 |
gaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgccgtcagtttaccggacacagcaccagcctgcagcg- |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
579412 |
gaatactgcctatataactgatctcgcctaaggtcataaagccaaatcattcaattaaaaccgcagtcagttttccggacacagcaccagcctgcagcgt |
579313 |
T |
|
| Q |
298 |
tatgtacagatcaccacaggtgttgccag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
579312 |
tatgtacagatcaccacaggtgttgccag |
579284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University