View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21503_high_13 (Length: 311)
Name: NF21503_high_13
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 39274774 - 39275075
Alignment:
| Q |
1 |
ccacttaccaagggggaataaaccaccgaagccaccaatcccgggagtcatctttgcaattcttcgaacaagctcagaaccagcatcaatgtcaacaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39274774 |
ccacttaccaagggggaataaaccaccgaagccaccaatcccgggagccatctttgcaattcttcgaacaagctcagaaccagcatcaatgtcaacaccg |
39274873 |
T |
|
| Q |
101 |
gagtctttatacgtcagaccttgaccttcagctctaacagcaacaactctggtatcgttcttcttcaagttggacattgaaagtgctctgttgttacctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39274874 |
gagtctttatacgtcagaccttgaccttcagctctaacagcaacaactctggtatcgttcttcttcaagttggacattgaaagtgctctgttgttacctc |
39274973 |
T |
|
| Q |
201 |
cgattgcattgagaaaactgtggttgattgtggcggtgcatttacagttgtgagaattaggtttgaatgatgctactgcaagaaaatgtgatagttctgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39274974 |
cgattgcattgagaaaactgtggttgattgtggcggtgcatttacagttgtgagaattaggtttgaatgatgctactgcaagaaaatgtgatagttctgt |
39275073 |
T |
|
| Q |
301 |
gc |
302 |
Q |
| |
|
|| |
|
|
| T |
39275074 |
gc |
39275075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 40994854 - 40994631
Alignment:
| Q |
12 |
gggggaataaaccaccgaagccaccaatcccgggagtcatctttgcaattcttcgaacaagctcagaaccagcatcaatgtcaacaccggagtctttata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||| ||||||||||| || ||||| || || |
|
|
| T |
40994854 |
gggggaataaaccaccgaagccaccaatcccgggagccatcttggcaattcttcgaacaagctgagaatcagcgtcaatgtcaactccagagtccttgta |
40994755 |
T |
|
| Q |
112 |
cgtcagaccttgaccttcagctctaacagcaacaactctggtatcgttcttcttcaagttggacattgaaagtgctctgttgttacctccgattgcattg |
211 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||| || ||| || | |||||||| |||||||||||||||| ||||||||| || |
|
|
| T |
40994754 |
agtaagaccttgaccttcatctctaacagcaacaactctgcta---------ttcgagctcgacattgatagtgctctgttgttacggccgattgcaatg |
40994664 |
T |
|
| Q |
212 |
agaaaactgtggttgattgtggcggtgcattta |
244 |
Q |
| |
|
| ||||||||| |||||||||| ||||||||| |
|
|
| T |
40994663 |
cgcaaactgtgggtgattgtggcagtgcattta |
40994631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University