View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21503_high_2 (Length: 544)
Name: NF21503_high_2
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 527
Target Start/End: Complemental strand, 43617192 - 43616695
Alignment:
| Q |
30 |
gttccaacctaacttccactgctcaaaatctctttcaaaagctatggcaatgacaaatgactgaattgcacttgataggctctgaatggttatgaacttt |
129 |
Q |
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| T |
43617192 |
gttccaacctaacttccactgctcaatatctctttcaaaagctatggcaatgacaaatgactgaattgcacttgataggctctgaatggttatgaacttt |
43617093 |
T |
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| Q |
130 |
agctttgaagggtagctcttaagtaactgagcctatttttattcaaaaggtttggtgttagcttagttgtgagaatttgacattgtaacctttaggaaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617092 |
agctttgaagggtagctcttaagtaactgagcctatttttattcaaaaggtttggtgttagcttagttgtgagaatttgacattgtaacctttaggaaaa |
43616993 |
T |
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| Q |
230 |
gaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattatttttctgttcactaaattttgttnnnnnnnttatcgataacgc |
329 |
Q |
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| T |
43616992 |
gaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattatttttctgttcactaaattttgttaaaaaaattatccatgacgc |
43616893 |
T |
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| Q |
330 |
agagaattcataatgtaacacaaatgttttcatcattctagaccttataccgcaaattgaaattaaattaatggtacctgaagtacaagccacaagctcc |
429 |
Q |
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| T |
43616892 |
agagaattcataatgtaacacaaatgttttcatcattctagaccttataccacaaattgaaattaaattaatggtacctgaagtacaagccacaagctcc |
43616793 |
T |
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| Q |
430 |
acatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattgttgtgatgatgtcca |
527 |
Q |
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| T |
43616792 |
acatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattgttgtgatgatatcca |
43616695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 43610454 - 43610312
Alignment:
| Q |
30 |
gttccaacctaacttccactgctcaaaatctctttcaaaagctatggcaatgacaaatgactgaattgcacttgataggctctgaatggttatgaacttt |
129 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||| || |
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| T |
43610454 |
gttccaacccaacttccactgctcaatatctctttcaaaagctatagcaatgacaaatgactgaattgcacttgataggctttgaatgctcatgaacctt |
43610355 |
T |
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| Q |
130 |
agctttgaagggtagctcttaagtaactgagcctatttttatt |
172 |
Q |
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| T |
43610354 |
agctttgaagggtaagttttaagcaactgagcctgtttttatt |
43610312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 43604056 - 43603914
Alignment:
| Q |
30 |
gttccaacctaacttccactgctcaaaatctctttcaaaagctatggcaatgacaaatgactgaattgcacttgataggctctgaatggttatgaacttt |
129 |
Q |
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| T |
43604056 |
gttccaacccaacttccactgctcaaaatctctttcaaaagctatagcaatgataaatgactgaattgcactagatatgctctgaatgctcatgaacctt |
43603957 |
T |
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| Q |
130 |
agctttgaagggtagctcttaagtaactgagcctatttttatt |
172 |
Q |
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| T |
43603956 |
aatcttgaagggtaacttttaagtaactgagcctgtttttatt |
43603914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 390 - 527
Target Start/End: Complemental strand, 43610206 - 43610070
Alignment:
| Q |
390 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
489 |
Q |
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|||||||||| || |||||||||||||| |||||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43610206 |
aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgatt |
43610108 |
T |
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| Q |
490 |
catgatattcatgttcttgattgttgtgatgatgtcca |
527 |
Q |
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| T |
43610107 |
cactatcttcatgttgttgatagttgtgatgatatcca |
43610070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 390 - 527
Target Start/End: Complemental strand, 43603798 - 43603661
Alignment:
| Q |
390 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
489 |
Q |
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|||||||| || |||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||| |
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| T |
43603798 |
aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgatt |
43603699 |
T |
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| Q |
490 |
catgatattcatgttcttgattgttgtgatgatgtcca |
527 |
Q |
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| T |
43603698 |
cactatctttatgttgttgatagttgtgatgatatcca |
43603661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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