View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21503_high_3 (Length: 536)
Name: NF21503_high_3
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 592250 - 592786
Alignment:
| Q |
1 |
aagagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592250 |
aagagcttgtcacgaacttcacgacccaaaaggcatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatc |
592349 |
T |
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| Q |
101 |
cccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
592350 |
cccactttgagaaatagtcctgtaaatttggttcatgtttgagaaaacaacacagccaaagaaagctgcaagagaggaatttacaattatcaacataaag |
592449 |
T |
|
| Q |
201 |
taaccaacaatcaagtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatg |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592450 |
taacaaacaatcaagtctcagaagtttgataccattattataccatgatcatgtcaagtcgaaacagaattcaagagcttctccagcttatcaaaatatg |
592549 |
T |
|
| Q |
301 |
ataatgaattcaagttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacat |
400 |
Q |
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| T |
592550 |
ataatgaattcaagttgcagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtggagttgataaccattgggatgcaaacat |
592649 |
T |
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| Q |
401 |
gactgctgaaattgtgataaaaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttatcacccccaa |
500 |
Q |
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| T |
592650 |
gactgctgacattgtgat--aaatgtatcaccaccatctactataaagttattactacctccattcattttcaattgtcgtctaaggttatcacccccaa |
592747 |
T |
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| Q |
501 |
ctacca---tgttaattttgatggaattgtttctgttga |
536 |
Q |
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| T |
592748 |
ctaccatgttgttaattttgatggaattgtttcttttga |
592786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 580177 - 579642
Alignment:
| Q |
1 |
aagagcttgtcacgaacttcacgacccaaaaggcatctactggttgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatc |
100 |
Q |
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||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580177 |
aagagcttgtcacgaacttcacgacccaagagacatctactggctgtcaagatgatcagatgctcaagctcatacttcaaatcaacttcaccgcttgatc |
580078 |
T |
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| Q |
101 |
cccactttgagaaatagtcctgtaaatttggttcatgtttcagaaaacaacacagccnnnnnnngttgcaagagaggaatttacaattatcaacataaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
580077 |
cccactttgagaaatagtcctgtaaatttggttcatgtttgagaaat-aacacagtgaaagaaagttgcaagagaggaatttacaattatcaacataaag |
579979 |
T |
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| Q |
201 |
taaccaacaatcaagtctcagaagtttgataccattattataccatgatcatgacaagtcgaaacagaattcaagagcttctccagcttatcaaaatatg |
300 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
579978 |
aaacaaacaatcaagtctcagaggtttgataccattattataccatggtcatgtcaagtccaaacagaattcaagagcttctccagcttatcaaaatatg |
579879 |
T |
|
| Q |
301 |
ataatgaattcaagttgaagtgtaaaattttattttcaattacgttaagaatttggcttcatgaacagtgtgga-gttgataaccattgggatgcaa--- |
396 |
Q |
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| T |
579878 |
ataatgaattcaagttgcagtgtaaaattttattttca--------aagaatttggcttcatgaaaagtgtggaggtggataaccatt-agatgcaaaca |
579788 |
T |
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| Q |
397 |
-----acatgactgctgaaattgtgataaaaatgtatcaccaccatctactataaagttattactacctccattcatgttcaattgtcgtctaaggttat |
491 |
Q |
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||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||| | ||||| |||||||||||| |||| |||| |
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| T |
579787 |
tgagtacatgacagctgacattgtgat--aaatgtatcaccactatctactataaagttattattacctgctttcattttcaattgtcgtttaagtttat |
579690 |
T |
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| Q |
492 |
cacccccaactacca---tgttaattttgatggaattgtttctgttga |
536 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
579689 |
cacccccaactaccatgttgttaattttgatagaattgtttcttttga |
579642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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