View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21503_high_5 (Length: 400)
Name: NF21503_high_5
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 371
Target Start/End: Original strand, 36562547 - 36562894
Alignment:
| Q |
24 |
catcatttccctttccttctccagagcaacctcaatggtttcctccatttcacgaatcttcccacgcatcacagcctcttcattccgcgagctcttcaaa |
123 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36562547 |
catcatttccctttccttctccagagcaacctcaatagtttcctccatttcacgaatcttcccacgcatcacagcctcttcattccgcgagctcttcaaa |
36562646 |
T |
|
| Q |
124 |
acctcattaagctgttgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaat |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36562647 |
acctcattaagctgctgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcacaccctcagcatcattcttctccttcaccaccaaat |
36562746 |
T |
|
| Q |
224 |
caatcttctccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccctatccttctcaagctcctcaaccttactttctct |
323 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36562747 |
caatcttctccttcaactcatcaatcaccttcaccgactcaatcgacttcttcacagccaaatccctatccttctcaagctcctcaaccttactttctct |
36562846 |
T |
|
| Q |
324 |
ctcagccttttcatcaaacagtttccgtgcatcccacctcatcttctc |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36562847 |
ctcagccttttcatcaaacagtttccgtgcatccaacctcatcttctc |
36562894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 203 - 296
Target Start/End: Complemental strand, 952176 - 952083
Alignment:
| Q |
203 |
tcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccctatcctt |
296 |
Q |
| |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||| |||||| || ||||| ||||||| |
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| T |
952176 |
tcttctcatacaccaccaaaacaatcttctccttcaactcatcaatcaccttcatcgattcaaacaacttattcacaacctaatccttatcctt |
952083 |
T |
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