View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21503_high_6 (Length: 371)
Name: NF21503_high_6
Description: NF21503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21503_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 13511470 - 13511814
Alignment:
| Q |
14 |
gagagaatcaataaccctggtcggccacgataatctgtccaatctaaaggacaaatgtttgttgaccaagccaatacctaattcaattaagacaatttta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13511470 |
gagagaatcaataaccctggtcggccacgataatatgttcaatctaaaggacaaatgtttgttgaccaagtcaatacctaattcaattaagacaatttca |
13511569 |
T |
|
| Q |
114 |
aacgagtaagaagtgggaatccatcacctaatgatgggagaagcccaatgatcatgctttcaaaacataagttgttacgactagctgtaatggggggcta |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13511570 |
aacgagtaagaagtgggaaaccatcacctaatgatgggagaagccaaatgatcacgctttcaaaacataagttgttacgactagctgtaatggggggcta |
13511669 |
T |
|
| Q |
214 |
ttgccgtaacaactacaaagctcatgcttgttggatttttgtttgaacacttgaatgatttgatgtaattgctatttaatatgatgattatgatgtaata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13511670 |
ttgccgtaacaactacaaagctcatgcttgttggatttttgtttgaacacttgaatgatttgatgtaattgctatttaatatgatgcttatgatgtaata |
13511769 |
T |
|
| Q |
314 |
catgaatgtagtagtacttagcctataaatagacatatgttctct |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13511770 |
catgaatgtagtagtacttagcctataaatagacatatgttctct |
13511814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 13601001 - 13601345
Alignment:
| Q |
14 |
gagagaatcaataaccctggtcggccacgataatctgtccaatctaaaggacaaatgtttgttgaccaagccaatacctaattcaattaagacaatttta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13601001 |
gagagaatcaataaccctggtcggccacgataatatgttcaatctaaaggacaaatgtttgttgaccaagtcaatacctaattcaattaagacaatttca |
13601100 |
T |
|
| Q |
114 |
aacgagtaagaagtgggaatccatcacctaatgatgggagaagcccaatgatcatgctttcaaaacataagttgttacgactagctgtaatggggggcta |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13601101 |
aacgagtaagaagtgggaaaccatcacctaatgatgggagaagccaaatgatcacgctttcaaaacataagttgttacgactagctgtaatggggggcta |
13601200 |
T |
|
| Q |
214 |
ttgccgtaacaactacaaagctcatgcttgttggatttttgtttgaacacttgaatgatttgatgtaattgctatttaatatgatgattatgatgtaata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13601201 |
ttgccgtaacaactacaaagctcatgcttgttggatttttgtttgaacacttgaatgatttgatgtaattgctatttaatatgatgcttatgatgtaata |
13601300 |
T |
|
| Q |
314 |
catgaatgtagtagtacttagcctataaatagacatatgttctct |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13601301 |
catgaatgtagtagtacttagcctataaatagacatatgttctct |
13601345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 16840244 - 16840277
Alignment:
| Q |
14 |
gagagaatcaataaccctggtcggccacgataat |
47 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
16840244 |
gagagaatcaataaccctggtcggccgcgataat |
16840277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University