View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21504_high_3 (Length: 400)
Name: NF21504_high_3
Description: NF21504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21504_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 69 - 383
Target Start/End: Original strand, 25584206 - 25584515
Alignment:
| Q |
69 |
gtatttttcatgatcatgcaattcggttggtgagataagagacgttgaagaagttttaagtaaaaaagattacaagttcaaactctgaaaactaacataa |
168 |
Q |
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| T |
25584206 |
gtatttttcataatcatgcagttcggttggtgaggtaagagacattgaagaagttttta----aaaagattacgagttcaaactctgaaaactaacataa |
25584301 |
T |
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| Q |
169 |
ttatttgatgtatagnnnnnnntataataatttgttgtgtaccttaaaagaaggttgaaggaggaaagtgttgctaaaggtgattagaaaaagctccggc |
268 |
Q |
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| T |
25584302 |
taatttgatatatagaaaaaa-tataataatttgttatgtaccttaaaagaaggttgaaggaggaaagtgttgctaaaggtgattagaaaaagctccggc |
25584400 |
T |
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| Q |
269 |
agcagcaagaaagtgaactgtgtgaagtggttggaacatgtaggccattttatataagaaaaattgaagggggtgaattaaagcttaattaaattgaggg |
368 |
Q |
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| T |
25584401 |
agcagcaagaaagtgaactgtgtgaagtggttggaacatgtaggccattttatataagaaaaattgaagggggtgaattaaagcttaattaaattgaggg |
25584500 |
T |
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| Q |
369 |
agagaggtggagggt |
383 |
Q |
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| T |
25584501 |
agagaggtggagggt |
25584515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 25584113 - 25584147
Alignment:
| Q |
21 |
aaaaaagttttgagtaagaggttcagaggtcaaac |
55 |
Q |
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| T |
25584113 |
aaaaaagttttgagtaagaggtttagaggtcaaac |
25584147 |
T |
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