View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21504_low_1 (Length: 611)
Name: NF21504_low_1
Description: NF21504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21504_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Original strand, 10306529 - 10307099
Alignment:
| Q |
18 |
tgttgttggaacattgattgtgcttttccctttcaatactattgattttgcaaatagggttttgtgttttttcatgcttgtttcgattaccggattggtt |
117 |
Q |
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| T |
10306529 |
tgttgttggaacattgattgtgtttttccctttcaacactattgattttgcaaatagggttttgtgttttttcatgcttgtttcgataaccggattggtt |
10306628 |
T |
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| Q |
118 |
ggaattggaattgttgttgctagagctaatataataagctcttttggttcaatttcatggaaattttcgtcgattttgccgattataccggttgctgtgt |
217 |
Q |
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| T |
10306629 |
ggaattggaattgttgttgctagagctaatataataagctcttttgcttcaatttcatggaaattttcgtcgattttgccgattataccggttgctgtgt |
10306728 |
T |
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| Q |
218 |
taacattagggtttcatgtgattactccttttatatgtaaaattgctggtaatactattgatgaagcaagaaaagcaatactaatcggcggtgttgttcc |
317 |
Q |
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| T |
10306729 |
taacattagggtttcatgtgattactccttttatatgtaaaattgctggtaatactattgatgaagcaagaaaagcaatactgatcggcggtgttgttcc |
10306828 |
T |
|
| Q |
318 |
tttggtaatggttctgtcatggaatttgatagtgttgggacttgttggagctaataaaggtccagactttgttggtgatcctattacccttttgctttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10306829 |
tttggtaatggttctgtcatggaatttgatagtgttgggacttgttggagctaataaaggtccagactttgttggtgatcctattacccttttgctttct |
10306928 |
T |
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| Q |
418 |
gtgaatccttctgctttatctgctgttcaaggatttgctttttcggctatggcgactagtttgatcggttatgctgtgagtttgcctaaacagattcttg |
517 |
Q |
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| T |
10306929 |
gtgaatccttctgctttatctgctgttcaaggatttgctttttcggctatggcgaccagtttgatcggttatgctgtgagtttgcctaaacagattcttg |
10307028 |
T |
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| Q |
518 |
atactttggaattggtatctggaaaaggtgatgataatgagtatggaaagggaagagttggatcggttttc |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10307029 |
atactttggaattggtatctggaaaaggtgatgataatgagtatggaaagggaagagttggatcagttttc |
10307099 |
T |
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