View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21504_low_2 (Length: 570)
Name: NF21504_low_2
Description: NF21504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21504_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Original strand, 8375873 - 8376412
Alignment:
| Q |
12 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8375873 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
8375972 |
T |
|
| Q |
112 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8375973 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacacatttgttgcttggtgatgcagag |
8376072 |
T |
|
| Q |
212 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376073 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
8376172 |
T |
|
| Q |
312 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8376173 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacactgtccaggtactt |
8376272 |
T |
|
| Q |
412 |
caagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
511 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376273 |
caagttc-ttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
8376371 |
T |
|
| Q |
512 |
caacaattccatcctttggtagaaaagtgtagagaaataga |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8376372 |
caacaattccatcctttggtagaaaagtgtagagaaataga |
8376412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Complemental strand, 7095929 - 7095389
Alignment:
| Q |
12 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7095929 |
agcagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagagggctga |
7095830 |
T |
|
| Q |
112 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095829 |
tttgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagat |
7095730 |
T |
|
| Q |
212 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095729 |
tattggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcaga |
7095630 |
T |
|
| Q |
312 |
gtgcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095629 |
gtgcaagaactaaattgggtgatgattttctgaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtactt |
7095530 |
T |
|
| Q |
412 |
caagttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
511 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7095529 |
caagttctttcgtcagactgtggattaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaatt |
7095430 |
T |
|
| Q |
512 |
caacaattccatcctttggtagaaaagtgtagagaaataga |
552 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7095429 |
caacaattccatcctttggtagaaaaatgtagagaaataga |
7095389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Original strand, 15420472 - 15421010
Alignment:
| Q |
14 |
cagagagaagatagggaagcagattcaaggggattggcagatttccgtcgtcacaatccacctcaattccatggagaattagacccagagaaggctgatt |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| || ||| | ||||||||||||||||||| |
|
|
| T |
15420472 |
cagagagaagatagggcagcagattcaaggggcttggctgattttcgtcgtcacaatccaccccaattccacggggaagtggacccagagaaggctgatt |
15420571 |
T |
|
| Q |
114 |
tgtggctacaagaagtggagaagattttgaaagtgattaactgtcctgaagaatcaaaggtgaaatatgccacatatttgttgcttggtgatgcagagta |
213 |
Q |
| |
|
|||||||||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
15420572 |
tgtggctacaagaagttgaaaagattttgaatgtgattaactgtcctgaagattctaaggtgaaatatgccacttatctgttgcttggtgatgcagagta |
15420671 |
T |
|
| Q |
214 |
ttggtggaaaaatgctaaaaatatgttagaaaatgcgcaagaggaaatcagttgggaggtttttcagaccaagttcttggaaagatattttcctcagagt |
313 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
15420672 |
ttggtggaaaaatgccaaaagtatgttagagaatgctcaagaggaaatcacttgggaggtttttcaagccaagttcttggaaagatttttccctcagagt |
15420771 |
T |
|
| Q |
314 |
gcaagaactaaattgggtgatgattttctaaagttacaacagggcaacatgacggtaggagcatatgcagcaaggtttgagacattgtccaggtacttca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
15420772 |
gcaagaactaaattgggtgatgattttctgaagttacgacagggcaacatgacggtaggagcatatgcagcaaggtttgagacgctatctaggtacttca |
15420871 |
T |
|
| Q |
414 |
agttctttcgtcagactgtggatgaggcctacatgtgccaccgattccaagaagggctcaaggatgaaattcaagacatggtaatgccattgggaattca |
513 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
15420872 |
agttcttccgtcagaccgtggatgaagcctacatgtgccatcgattccaagaggggcttaaggatgaaattcaagacatggtgatgcctttgggaattca |
15420971 |
T |
|
| Q |
514 |
acaattccatcctttggtagaaaagtgtagagaaataga |
552 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
15420972 |
acaattccagcctttggttgaaaagtgcagagaaataga |
15421010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University