View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21504_low_5 (Length: 393)
Name: NF21504_low_5
Description: NF21504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21504_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 607476 - 607849
Alignment:
| Q |
19 |
taagaatgaatatatggaaattttatcatacaaaatatgacatgataacaaaaatcatagatacaacatatgacatgataacnnnnnnnncaccaaccat |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
607476 |
taagaatgaatagatggaaattttatcatacaaaatatgacatgataacaaaaatcatagatacaacatatgacatgataacgaaaaaa-caccaaccat |
607574 |
T |
|
| Q |
119 |
gcatattgggaaaatgcgcaaccagcaccacca-----ggtctgaatacaacccgaagcagcaagatgtttgttgttgtcttcctcagtatgcgaggttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
607575 |
gcatattgggaaaatgcgcaaccagcaccaccagaccaggtctgagtacaacctgaagcagcaagatgtttgttgttgtgttcctcagtatgcgaggttc |
607674 |
T |
|
| Q |
214 |
atgtgctctgtgttttatgtgacgtatcttgtgtacacgttgtgtcttgtgcatcattgcactatcctctgtaacgcctctttttacgatgtcc-----a |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
607675 |
atgtgctctgtgtcttatgtgacgtatcttgtgtacacgttgtgtcttgtgcatcattgcactatcctctgtaacgcctctttttacgatgtccatatta |
607774 |
T |
|
| Q |
309 |
tgtgacgcgaaacctatcgagatatgtatatacaagattgcttgttttatcttttgtgacattggctcgtctgtg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
607775 |
tgtgacgcgaaacctatcgagatatgtatatacaagattgcttgttctatcttttgtgacattgtctcgtgtgtg |
607849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University