View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21504_low_6 (Length: 354)

Name: NF21504_low_6
Description: NF21504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21504_low_6
NF21504_low_6
[»] chr4 (5 HSPs)
chr4 (79-264)||(3187763-3187948)
chr4 (19-81)||(5878214-5878276)
chr4 (19-79)||(5874857-5874917)
chr4 (279-339)||(3183225-3183285)
chr4 (283-336)||(3183382-3183435)
[»] chr1 (1 HSPs)
chr1 (19-79)||(51189751-51189811)
[»] chr7 (2 HSPs)
chr7 (19-81)||(11851518-11851580)
chr7 (19-54)||(11847161-11847196)
[»] chr5 (1 HSPs)
chr5 (19-79)||(38296783-38296843)
[»] chr8 (2 HSPs)
chr8 (19-79)||(14655607-14655667)
chr8 (19-54)||(20049425-20049460)
[»] chr2 (2 HSPs)
chr2 (19-79)||(15592013-15592066)
chr2 (19-52)||(15601006-15601039)
[»] chr3 (1 HSPs)
chr3 (21-81)||(2774581-2774641)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 79 - 264
Target Start/End: Complemental strand, 3187948 - 3187763
Alignment:
Q  79 atttatacatgtaaaagatgaaggaaatctgaaaggctaacgttttgagggaattgtgtcctagttataccagtgttgttaagttcccaactaggtgcat 178  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3187948 atttatacatgtaaaagatgaaggaaatctcaaagactaacgttttgagggaattgtgtcctagttatactagtgttgttaagtccccaactaggtgcat 3187849  T
Q  179 gattaagtatcaaccattgataatttcttaagatcacatgtcacaatcactattttaacatattgattttactatttaaaagcatt 264  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  3187848 gattaagtatcaatcattgataatttcttaagatcacatgtcacaatcacaattttaacatattgattttactatttaaaaacatt 3187763  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 5878276 - 5878214
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaacatt 81  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5878276 aactaagtcatacttcctaataatagaaatagattaaatataaccacaacataatctaacatt 5878214  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 5874917 - 5874857
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaaca 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5874917 aactaagtcatacttcctaataatagaaatagattaaatataaccacaacataatctaaca 5874857  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 339
Target Start/End: Complemental strand, 3183285 - 3183225
Alignment:
Q  279 ttcaattattgagatttatgtaactgggttgatgtgagtgggtgttatagaggaaaaaatt 339  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3183285 ttcaattgttgagatttatgtaactggattgatgtgagtgggtattatagaggaaaaaatt 3183225  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 336
Target Start/End: Complemental strand, 3183435 - 3183382
Alignment:
Q  283 attattgagatttatgtaactgggttgatgtgagtgggtgttatagaggaaaaa 336  Q
    |||||||||||||||| |||||||| ||||||||||| |  |||||||||||||    
T  3183435 attattgagatttatgcaactgggtcgatgtgagtggcttctatagaggaaaaa 3183382  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 51189811 - 51189751
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaaca 79  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  51189811 aactaagtcatacttcctaataatagaaatagattaaatataaccacaacataatctaaca 51189751  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11851580 - 11851518
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaacatt 81  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  11851580 aactaagtcatacttcctaataatagaaatagattaaatataaccacaaaataatctaacatt 11851518  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 11847196 - 11847161
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagatta 54  Q
    ||||||||||||||||||||||| ||||||||||||    
T  11847196 aactaagtcatacttcctaataacagaaatagatta 11847161  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 38296843 - 38296783
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaaca 79  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  38296843 aactaagtcatacttcctaataatagaaatatattaaatataaccacaacataatctaaca 38296783  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 14655607 - 14655667
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaaca 79  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||||  ||||| |||||    
T  14655607 aactaagtcatacttcctaataatagaaataaattaaacataaccacacaataatttaaca 14655667  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 20049425 - 20049460
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagatta 54  Q
    ||||||||||||||||||||||||||||||| ||||    
T  20049425 aactaagtcatacttcctaataatagaaataaatta 20049460  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 15592066 - 15592013
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaaca 79  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  15592066 aactaagtcatacttcctaataatagaaatag-------ataaccacaacataatctaaca 15592013  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 15601039 - 15601006
Alignment:
Q  19 aactaagtcatacttcctaataatagaaatagat 52  Q
    ||||||||||||||||||||||||||||||||||    
T  15601039 aactaagtcatacttcctaataatagaaatagat 15601006  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 2774641 - 2774581
Alignment:
Q  21 ctaagtcatacttcctaataatagaaatagattacatataaccacaacataatctaacatt 81  Q
    ||||||||||||||||||||||| ||| | |||| | |||||||||  ||||| |||||||    
T  2774641 ctaagtcatacttcctaataatataaacaaattaaacataaccacacaataatttaacatt 2774581  T

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