View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_high_2 (Length: 499)
Name: NF21505_high_2
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 265 - 483
Target Start/End: Complemental strand, 23445450 - 23445235
Alignment:
| Q |
265 |
cctcaaaaacgccggctaaccctagcatgcgtctactacctgtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaac |
364 |
Q |
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| T |
23445450 |
cctcaaaaacgccggcgaaccctagcatgcgtctac---cggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaac |
23445354 |
T |
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| Q |
365 |
ctcttcagaaagcaccgtagtgaaaagagacaaaactaggaggacgagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaa |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23445353 |
ctcttcagaaagcaccgtagtgaaaagagacaaaactaggaggaggagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaa |
23445254 |
T |
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| Q |
465 |
taagttttattgtagaaga |
483 |
Q |
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||||||||||||||||||| |
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| T |
23445253 |
taagttttattgtagaaga |
23445235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 23445536 - 23445743
Alignment:
| Q |
19 |
ctcttcttacaatcctgccagttcttaccctcttgccagttatagtataacagttgtaatggtttatgtactttatgcatgagaataattttatttgttg |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23445536 |
ctcttcttacaatcctaccagttcttaccctcttgccagttatattataacagttataatggtttatgtactttatgcatgagaataattttatttgttg |
23445635 |
T |
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| Q |
119 |
atatcattgtagtggatggatcgtagattggtgtatcaaattgccaacactagagcactcagaacacaaattttctgctgaataatggcaaatttgttaa |
218 |
Q |
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| T |
23445636 |
atatcattgtagtggatggatcgtggattggtgtatcaaattgccaacactag----------------attttctgctgaataatggcaaatttgttaa |
23445719 |
T |
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| Q |
219 |
gtttagttagattttattacagtt |
242 |
Q |
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| T |
23445720 |
gtttagttagattttattacagtt |
23445743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 306 - 483
Target Start/End: Complemental strand, 23430619 - 23430442
Alignment:
| Q |
306 |
gtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaacctcttcagaaagcaccgtagtgaaaagagacaaaactagga |
405 |
Q |
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|||||||||||||||| ||||| |||||| ||||||||||||| ||||||| ||| |||||||||||||||| || | || ||||| |||||||| |
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| T |
23430619 |
gtggaaggcaatgtcaggtgaacatgggttggagagtaagtggtgggaagattcttaacctcttcagaaagcgccatggtaggaagagtatcaactagga |
23430520 |
T |
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| Q |
406 |
ggacgagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaataagttttattgtagaaga |
483 |
Q |
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| T |
23430519 |
gcatgagcagcgctaaggtcatgactttggacatttttgtatgcaagagaaagtaataataagctttattgtagaaga |
23430442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 475
Target Start/End: Complemental strand, 23438677 - 23438507
Alignment:
| Q |
306 |
gtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaacctcttcagaaagcaccgtagtgaaaagagacaaaactagga |
405 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||| || | | |||||||| |
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| T |
23438677 |
gtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaagagtctcaacctctttagaaagcaccgtagtgggaattgtctcaactagga |
23438578 |
T |
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| Q |
406 |
ggacgagcaacactaaggtcatggctttggaca-ttttgatatgcaagagaaagtaaaaataagttttatt |
475 |
Q |
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| | ||| || |||||| |||| |||| |||| |||| |||||||||||||||||||||||| |||||| |
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| T |
23438577 |
gcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagctttatt |
23438507 |
T |
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