View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_high_5 (Length: 443)
Name: NF21505_high_5
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 25406486 - 25406909
Alignment:
| Q |
1 |
ctagtaactgaggcaatacatttaggcacgtggggaaagtttaatattttagttagtccaatgcaattaagatttgttctttatttatttatgggaacca |
100 |
Q |
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| T |
25406486 |
ctagtaactgaggcaatacatttaggcacgtggggaaagtttaatattttagttagtcccatgcaattaagatttgttctttatttatttatgggaacca |
25406585 |
T |
|
| Q |
101 |
tgcaaaaacaaaaatgcagtagaagnnnnnnnntgatatctaaagtttaggctagggaaattaaataaagagggtgagatactaacggtgcagaatgaaa |
200 |
Q |
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| T |
25406586 |
tgcaaaaacaaaaatgcagtagaagaaaaaaaatcatatctaaagtttaggctagggaaattaaataaagagggtgagatactaacggtgcagaatgaaa |
25406685 |
T |
|
| Q |
201 |
ctgaagagagaaaaaatatggnnnnnnncagaaatgaaatatataagtaaggccaaattggtcgatgaaagtggctccacgagggagacagtggaatcaa |
300 |
Q |
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| T |
25406686 |
ctgaagagagaaaaaatatggaaaaaaacagaaatgaaatat--aagtaaggccaaattggtcgatgaaagtggctccacgagggagacagtggaatcaa |
25406783 |
T |
|
| Q |
301 |
atcaacggctaaatcttacacttagattatcttcacggttaagatagattccctagcatgatttcaatttctgttttcttgtgttgataatggtttcaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25406784 |
atcaacggctaaatcttacacttagattatcttcacggttaagatagattccctagcatgatttcaatttctgttttcttgtgttgataatggtttcaac |
25406883 |
T |
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| Q |
401 |
tttcaatggtttcaagagggagagat |
426 |
Q |
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| T |
25406884 |
tttcaatggtttcaagagggagagat |
25406909 |
T |
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