View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_low_1 (Length: 651)
Name: NF21505_low_1
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_low_1 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 15 - 633
Target Start/End: Complemental strand, 5885858 - 5885224
Alignment:
| Q |
15 |
caaaggataaattcagtaaaaacaacatgtacaaaatgcaagtgaacacctaaagagaaattccaattggtataatcaataattgcttttcttttaaagc |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5885858 |
caaaggataaactcagtaaaaacaacatgtacaaaatgcaagagaacacctaaagagaaattccaattggtgtaatcaataattgcttttcttttaaagc |
5885759 |
T |
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| Q |
115 |
aggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatgccgaacaa |
214 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
5885758 |
aggaactgttgccggagtttacgtcgcttagaattataaagtaccaaacattgctgagcgggctgatactgtcttcaaaatggtgaacgatgccgaataa |
5885659 |
T |
|
| Q |
215 |
agatatagaaacgattaaaatgatcaaataattagttatatatgaattaggttcttgtttaaatctttttgtttttaatcatggatactactataggatc |
314 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5885658 |
agatatagaaacgattaaaatgatc-aataattagttatatatgaatcaggttcttgtttaaatctttttgtttttactcatggatactactataggatc |
5885560 |
T |
|
| Q |
315 |
aatcaaatatctactatgagcaaacatggatccttacatagtatcattgtgtgtgcgtatacaatattcttcgtgtatcacttcaaattttctcgcgctt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
5885559 |
aatcaaatatctactatgagcaaacatggatccttacatagtatcattgtgagtgcgtatacaattttcttcgtgtaccacttcaaattttctcgcgctt |
5885460 |
T |
|
| Q |
415 |
ttcttttcctcccaaaattaaaat-----------------caatgaagatcgatggagcatgcggtggagatgcttgggatcgacaacaattcattgtg |
497 |
Q |
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| T |
5885459 |
ttcttttcctcccaaaattaaaatcaatcaagagccggaagcaatgaagatcgatggagcatgcggtggagatgcttgggatcaacaacagttcattgtg |
5885360 |
T |
|
| Q |
498 |
ttgcatgagaggcccgagcaaagagggctaacgtccattaccaatggcataaggttatttattgtgataacttctcctagtgcagaactatcttttatgt |
597 |
Q |
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| T |
5885359 |
ttgcatgagaggcccgagcaaagagggctaacgtccattaccaatggcataaggttatttattgtgataacttctcccagtgcagaactatcttttatgt |
5885260 |
T |
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| Q |
598 |
ttgatttttaataagttaatttataccaatcatttg |
633 |
Q |
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| T |
5885259 |
tttatttttaataagttaatttataccaatcatttg |
5885224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 45373254 - 45373382
Alignment:
| Q |
78 |
caattggtataatcaataattgcttttcttttaaagcaggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggc |
177 |
Q |
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|||||||||||||||| |||||||| |||||| ||| ||||||||||| || |||||||| ||| | ||||||||| ||||||||||||||||| |||| |
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| T |
45373254 |
caattggtataatcaagaattgcttctcttttgtagctggaactgttgccggtgtttacgttgctcaaaattataaactacctaacattgctgagagggc |
45373353 |
T |
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| Q |
178 |
tgatactgtcttcaaaatggtgaaagatg |
206 |
Q |
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| T |
45373354 |
tgataccgtcttcaaaatggtcaaagatg |
45373382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 45369973 - 45370079
Alignment:
| Q |
83 |
ggtataatcaataattgcttttcttttaaagcaggaactgttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgata |
182 |
Q |
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||||||||||| |||||| ||||||| ||||||||||||| | || |||||||||||| |||| |||||||||||| |||||||| ||| ||||||| |
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| T |
45369973 |
ggtataatcaagggttgcttctcttttatagcaggaactgttaccggtgtttacgtcgctcagaactataaagtacctgacattgctaagctcgctgata |
45370072 |
T |
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| Q |
183 |
ctgtctt |
189 |
Q |
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| T |
45370073 |
ctttctt |
45370079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 96258 - 96341
Alignment:
| Q |
123 |
ttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatg |
206 |
Q |
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|||| ||||||||||| ||| | ||||||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||||||| |
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| T |
96258 |
ttgccggagtttacgttgctcaaaattataaactgcctaacattgctgagagggctgataccgtcttgaaaatggtcaaagatg |
96341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 9093295 - 9093378
Alignment:
| Q |
123 |
ttgctggagtttacgtcgcttagaattataaagtacctaacattgctgagcgggctgatactgtcttcaaaatggtgaaagatg |
206 |
Q |
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|||| ||||||||||||||| | ||||||||| | |||||||||||||| |||||||||| ||||| |||||||| ||||||| |
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| T |
9093295 |
ttgccggagtttacgtcgctcaaaattataaactgtctaacattgctgagagggctgataccgtcttgaaaatggtcaaagatg |
9093378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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