View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_low_11 (Length: 302)
Name: NF21505_low_11
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 2487103 - 2486801
Alignment:
| Q |
1 |
agcaagaacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcgcaattggaagaaccatatctact |
100 |
Q |
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| T |
2487103 |
agcaagaacaccatgcaaatctatgatgtttaaagtaaaagtaataaaagataaaataggaaaaacttacagtttcacaattggaagaaccatatctact |
2487004 |
T |
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| Q |
101 |
ttgaatctgcaaagataacaaccaaccattatgcgcatgacaaacataagaaattttcaaatgacacaa-nnnnnnnccaactcaccttcaatgaaaagt |
199 |
Q |
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| T |
2487003 |
ttgaatctgcaaagataacaaccagccattatgtgcatgacaaacataagaaattttcaaatgacacaattttttttccaactcaccttcaatgaaaagt |
2486904 |
T |
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| Q |
200 |
cagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttctgcgagatatgaacaggggaagtt |
299 |
Q |
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| T |
2486903 |
cagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttctgcgagatatgaacaggggaagtt |
2486804 |
T |
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| Q |
300 |
ttg |
302 |
Q |
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||| |
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| T |
2486803 |
ttg |
2486801 |
T |
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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 41594109 - 41594205
Alignment:
| Q |
180 |
actcaccttcaatgaaaagtcagttacatcgaagagaagcaacttggcctcaaagtagtgagttaaagccttggcaagcacctgttggtaaagttct |
276 |
Q |
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| T |
41594109 |
actcaccttcaatgaaaagtcagttaaatccaagagaagcaacttggcctcaaagtaatgagccaaagccttggcaagcacttgttggtaaagttct |
41594205 |
T |
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