View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_low_17 (Length: 217)
Name: NF21505_low_17
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 21715565 - 21715363
Alignment:
| Q |
1 |
cattttttaattaattaaaaaatgggtagaaattttgaaatttgagtaaattgattcaaagagttagttatgacttctaaatagattcaaattaattcaa |
100 |
Q |
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| T |
21715565 |
cattttttaattaattaaaaaatgggtagaaatttcgagatttgagtaaattgattcaaagaattagttatgacttctaaatagattcaaattaattcga |
21715466 |
T |
|
| Q |
101 |
aaacaaatcaagtaagttatgactttgaatcgattcaactttttnnnnnnnnngtatttaaagagctataaaagcacatacgacctaaaactaaaccaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715465 |
aaacaaatcaagtaagttatgactttgaatcgattcaac-ttttaaaaaaaatgtatttaaagagctataaaagcacatacgacctaaaactaaaccaaa |
21715367 |
T |
|
| Q |
201 |
aagg |
204 |
Q |
| |
|
|||| |
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| T |
21715366 |
aagg |
21715363 |
T |
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