View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_low_6 (Length: 439)
Name: NF21505_low_6
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 23445536 - 23445932
Alignment:
| Q |
19 |
ctcttcttacaatcctgccagttcttaccctcttgccagttatagtataacagttgtaatggtttatgtactttatgcatgagaataattttatttgttg |
118 |
Q |
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| T |
23445536 |
ctcttcttacaatcctaccagttcttaccctcttgccagttatattataacagttataatggtttatgtactttatgcatgagaataattttatttgttg |
23445635 |
T |
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| Q |
119 |
atatcattgtagtggatggatcgtagattggtgtatcaaattgccaacactagagcactcagaacacaaattttctgctgaataatggcaaatttgttaa |
218 |
Q |
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| T |
23445636 |
atatcattgtagtggatggatcgtggattggtgtatcaaattgccaacactaga----------------ttttctgctgaataatggcaaatttgttaa |
23445719 |
T |
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| Q |
219 |
gtttagttagattttattacaatttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagctattgtgat |
318 |
Q |
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| T |
23445720 |
gtttagttagattttattacagtttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagctattgtaat |
23445819 |
T |
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| Q |
319 |
aaaattagatttgtcatgttcatggtagtatctgaaatctttgttgcacaactttgaattaataaaatgtctttattgttgaagctactttacttcgatt |
418 |
Q |
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| T |
23445820 |
aaaattagatttgtcatgttcatggtagtatctgaaatctttgttgcacaactttgaattcataaaatgtctttattgttgaagctactttacttcgatt |
23445919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 431
Target Start/End: Original strand, 23446881 - 23446962
Alignment:
| Q |
349 |
tctgaaatctttgttgcacaactttgaattaataaaatgtctttattgttgaagctactttacttcgattgctttttcatatc |
431 |
Q |
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| T |
23446881 |
tctgtaatctttgttgcacaaatttgaattcataaattgtctttattgttgaa-ctactctacttcgattgctttctcatatc |
23446962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 320
Target Start/End: Complemental strand, 24298805 - 24298697
Alignment:
| Q |
211 |
tttgttaagtttagttagattttattacaatttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagct |
310 |
Q |
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|||||| |||| ||||||||| | || ||||||||| | | |||| ||||| |||| ||| |||||||||| |||||||||| ||||||||||| |||| |
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| T |
24298805 |
tttgttgagttcagttagattatgtt-caatttgttgactttgttatcaattagttagtccttctcttgtaacatgtggtcctttatgtgctagtgagct |
24298707 |
T |
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| Q |
311 |
attgtgataa |
320 |
Q |
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|||||||||| |
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| T |
24298706 |
attgtgataa |
24298697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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