View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21505_low_7 (Length: 427)

Name: NF21505_low_7
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21505_low_7
NF21505_low_7
[»] chr4 (4 HSPs)
chr4 (1-427)||(842768-843193)
chr4 (7-87)||(10453090-10453169)
chr4 (384-427)||(16010716-16010759)
chr4 (384-418)||(54779167-54779201)
[»] chr2 (4 HSPs)
chr2 (1-427)||(25384127-25384550)
chr2 (384-427)||(21186640-21186683)
chr2 (384-423)||(26144332-26144371)
chr2 (372-424)||(35198228-35198280)
[»] chr3 (4 HSPs)
chr3 (334-426)||(18267964-18268056)
chr3 (384-427)||(21768613-21768656)
chr3 (384-427)||(47542542-47542585)
chr3 (386-427)||(49636837-49636878)
[»] chr5 (3 HSPs)
chr5 (384-427)||(9895154-9895197)
chr5 (384-427)||(15086705-15086748)
chr5 (384-424)||(28322251-28322291)
[»] scaffold0330 (1 HSPs)
scaffold0330 (384-426)||(4362-4404)
[»] chr7 (3 HSPs)
chr7 (384-426)||(20204247-20204289)
chr7 (371-427)||(47045780-47045836)
chr7 (371-426)||(3262871-3262926)
[»] chr6 (6 HSPs)
chr6 (384-426)||(6074035-6074077)
chr6 (329-375)||(11602811-11602857)
chr6 (390-426)||(6073755-6073791)
chr6 (384-424)||(6074523-6074563)
chr6 (384-427)||(34490781-34490824)
chr6 (384-426)||(6294545-6294587)
[»] chr8 (3 HSPs)
chr8 (384-427)||(1592037-1592080)
chr8 (398-427)||(16824394-16824423)
chr8 (389-425)||(8626174-8626210)
[»] chr1 (1 HSPs)
chr1 (384-427)||(44402555-44402598)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 842768 - 843193
Alignment:
Q  1 aaactatccaaaaatctagcttcttctgttgatattcttcttgaattacttgatgtaatgtatcttttatcctttcttccattttttaatgtatctattg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  842768 aaactatccaaaaatctagcttcttctgttgatattcttcttgaattacttgatgtaatgtatcttttatcctttcttcctttttttaatgtatctattg 842867  T
Q  101 attaatttgatatatctattgatttttgtgtcctaaattacatttgtaattgaacttctggtttttgttatgttttttctgtatatctttgctgaattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  842868 attaatttgatatatctattgatttttgtgtcctaaattacatt-gtaattgaacttctggtttttgttatgttttttctgtatatctttgctgaattga 842966  T
Q  201 gtgtcattgattcaattgtatcttctgatcaggaggagtttagggtttgtgctatggttttttagtaaattgaatttcaatgttgttgattagatgcaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  842967 gtgtcattgattcaattgtatcttctgatcaggaggagtttagggtttgtgctatggttttttagtaaattgaatttcaatgttgttgattagatgcaaa 843066  T
Q  301 ccttatgtttgagtgaggtggaaatgttatgtggcaccaacagctctgatcaaaggtgtttccagtgtccgacacgacactctcacatgtgattgcgttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  843067 ccttatgtttgagtgaggtggaaatgttatgtggcaccaacagctctgatcaaaggtgtttccggtgtccgacacgacactctcacatgtgattacgttc 843166  T
Q  401 aaataattcattttctcaaattattac 427  Q
    |||||||||||||||||||||||||||    
T  843167 aaataattcattttctcaaattattac 843193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 10453090 - 10453169
Alignment:
Q  7 tccaaaaatctagcttcttctgttgatattcttcttgaattacttgatgtaatgtatcttttatcctttcttccatttttt 87  Q
    |||||||| || ||||||||||||||||  ||||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  10453090 tccaaaaaccttgcttcttctgttgataagcttcttgaaatacttgatgtaatgtat-tttttgcctttcttccatttttt 10453169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 16010759 - 16010716
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||    
T  16010759 cacatgtgattgcgttcaaatgatttattttctcaaattattac 16010716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 418
Target Start/End: Complemental strand, 54779201 - 54779167
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctca 418  Q
    ||||||||||| |||||||||||||||||||||||    
T  54779201 cacatgtgattacgttcaaataattcattttctca 54779167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 25384127 - 25384550
Alignment:
Q  1 aaactatccaaaaatctagcttcttctgttgatattcttcttgaattacttgatgtaatgtatcttttatcctttcttccattttttaatgtatctattg 100  Q
    |||||||||||||| ||||||||||| | |||||| |||||||||||||||||||||| |||||||||| |     ||| ||||||||||||||||||||    
T  25384127 aaactatccaaaaacctagcttcttcagctgatatgcttcttgaattacttgatgtaacgtatcttttaac-----ttctattttttaatgtatctattg 25384221  T
Q  101 attaatttgatatatctattgatttttgtgtcctaaattacatttgtaattgaacttctggtttttgttatgttt-tttctgtatatctttgctgaattg 199  Q
    ||||||||||| ||  | || || |||||||  ||||||||||| |||||||||||||||| |||||||||| || ||| ||||| | ||||||||||||    
T  25384222 attaatttgatttaaatgtt-atgtttgtgttttaaattacatt-gtaattgaacttctggattttgttatgcttctttgtgtatctttttgctgaattg 25384319  T
Q  200 agtgtcattgattcaattgtatcttctgatcaggaggagtttagggtttgtgctatggttttttagtaaattgaatttcaatgttgttgattagatgcaa 299  Q
     |||||||||||||||||| |||||||||||||||   |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| ||||||     
T  25384320 cgtgtcattgattcaattgcatcttctgatcagga---gtttagggtttgtgctatggctttctagtaaattgaatttcaatgttgttaatttgatgcat 25384416  T
Q  300 accttatgtttgagtgaggtggaaatgttatgtggcaccaacagctctgatcaaaggtgtttccagtgtccga------cacgacactctcacatgtgat 393  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||      |||||||||  ||||||||||    
T  25384417 accttatgattgagtgaggtggaaatgttatgtagcaccaacagctctaatcaaaggtgtttccggtgtctgacactggcacgacactgacacatgtgat 25384516  T
Q  394 tgcgttcaaataattcattttctcaaattattac 427  Q
    | |||||  |||||||||||| | ||||||||||    
T  25384517 tccgttcccataattcatttttttaaattattac 25384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 21186640 - 21186683
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  21186640 cacatgtgattacgttcaaataattcactttctcaaatcattac 21186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 26144332 - 26144371
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaatta 423  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  26144332 cacatgtgattccgttcaaataattaattttctcaaatta 26144371  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 35198228 - 35198280
Alignment:
Q  372 acacgacactctcacatgtgattgcgttcaaataattcattttctcaaattat 424  Q
    |||||||||  |||||||||||| | ||||| ||||||||||||| |||||||    
T  35198228 acacgacaccgtcacatgtgattacattcaattaattcattttcttaaattat 35198280  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 18267964 - 18268056
Alignment:
Q  334 gcaccaacagctctgatcaaaggtgtttccagtgtccgacacgacactctcacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    ||||| ||| |||||||||||||||  |||  ||||| |||| ||||   ||||||||||| ||||||| |||||||||||||||||||||||    
T  18267964 gcaccgacacctctgatcaaaggtgcatccgatgtccaacacaacaccgacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 21768656 - 21768613
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  21768656 cacatgtggttacgttcaaataattcattttctcaaattattac 21768613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 47542585 - 47542542
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||| | |||||||| |||||||||||||||||||||    
T  47542585 cacatgtgattacattcaaatagttcattttctcaaattattac 47542542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 386 - 427
Target Start/End: Original strand, 49636837 - 49636878
Alignment:
Q  386 catgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||| | ||||| ||||||||||||||||||||||||    
T  49636837 catgtgattacattcaattaattcattttctcaaattattac 49636878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 9895197 - 9895154
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||    
T  9895197 cacatgtgattacgttcaaataatttattttctcaaattattac 9895154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 15086748 - 15086705
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    
T  15086748 cacatgtgattacgttcaaataattcactttctcaaattattac 15086705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 28322291 - 28322251
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattat 424  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  28322291 cacatgtgattacattcaattaattcattttctcaaattat 28322251  T

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Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 4404 - 4362
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    |||||||||||| ||| ||||||||||||||||||||||||||    
T  4404 cacatgtgattgtgtttaaataattcattttctcaaattatta 4362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 20204289 - 20204247
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  20204289 cacatgtgattacgttcaaatgattcattttctcaaattatta 20204247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 47045836 - 47045780
Alignment:
Q  371 gacacgacactctcacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||| |||||  ||||| ||||| ||||||||| ||||||||||||||||||||||    
T  47045836 gacacaacactggcacatatgatttcgttcaaatcattcattttctcaaattattac 47045780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 3262871 - 3262926
Alignment:
Q  371 gacacgacactctcacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    |||||||||||  |||||||| |||| |||||||| |||| |||||||||||||||    
T  3262871 gacacgacactgacacatgtggttgcattcaaatatttcactttctcaaattatta 3262926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 6074077 - 6074035
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    ||||| ||||| |||||||||||||||||||||||||||||||    
T  6074077 cacatatgattacgttcaaataattcattttctcaaattatta 6074035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 11602811 - 11602857
Alignment:
Q  329 atgtggcaccaacagctctgatcaaaggtgtttccagtgtccgacac 375  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||    
T  11602811 atgtggcaccaacacctctgatcaaaggtgtgtccggtgtccgacac 11602857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 6073791 - 6073755
Alignment:
Q  390 tgattgcgttcaaataattcattttctcaaattatta 426  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6073791 tgattacgttcaaataattcattttctcaaattatta 6073755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 6074563 - 6074523
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattat 424  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  6074563 cacatgtgattacgttcaactaattcattttctcaaattat 6074523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 34490824 - 34490781
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||||| || |||||||||||||||| ||||||||||    
T  34490824 cacatgtgattgcatttaaataattcattttctaaaattattac 34490781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Original strand, 6294545 - 6294587
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattatta 426  Q
    |||||| |||||| ||||| |||||||||||||||||||||||    
T  6294545 cacatgcgattgcattcaattaattcattttctcaaattatta 6294587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 1592080 - 1592037
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||    
T  1592080 cacatgtgattgcattcaaataatatattttctcaaattattac 1592037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 398 - 427
Target Start/End: Complemental strand, 16824423 - 16824394
Alignment:
Q  398 ttcaaataattcattttctcaaattattac 427  Q
    ||||||||||||||||||||||||||||||    
T  16824423 ttcaaataattcattttctcaaattattac 16824394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 8626210 - 8626174
Alignment:
Q  389 gtgattgcgttcaaataattcattttctcaaattatt 425  Q
    |||||| |||| |||||||||||||||||||||||||    
T  8626210 gtgattacgtttaaataattcattttctcaaattatt 8626174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 44402555 - 44402598
Alignment:
Q  384 cacatgtgattgcgttcaaataattcattttctcaaattattac 427  Q
    |||||||||||||  |||||||||||| ||||||||||||||||    
T  44402555 cacatgtgattgcaatcaaataattcagtttctcaaattattac 44402598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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