View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21505_low_8 (Length: 394)
Name: NF21505_low_8
Description: NF21505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21505_low_8 |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 160 - 377
Target Start/End: Complemental strand, 8570620 - 8570401
Alignment:
| Q |
160 |
gaagaacgtctcagtataacccagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgatt |
259 |
Q |
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| T |
8570620 |
gaagaacgtctcagtataacgcagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgatt |
8570521 |
T |
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| Q |
260 |
cacacgttatg--tttcttcgtgagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagagagtttttgcgcgagtc |
357 |
Q |
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| T |
8570520 |
cacacgtttagagtttcttcatgagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagagagtttttgcgcgagtc |
8570421 |
T |
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| Q |
358 |
gggaagtgagagtagtctgt |
377 |
Q |
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| T |
8570420 |
gggaagtgagagtagtctgt |
8570401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 11989856 - 11989695
Alignment:
| Q |
181 |
cagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgtta-tgtttcttcgt |
279 |
Q |
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| T |
11989856 |
cagaggaattcaatacaccgaaacaatgttttaaaaattacaaacacaaaggaattcaatatgcagcaacagagtgattcatgcgtgagagtttctttgc |
11989757 |
T |
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| Q |
280 |
gagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagag |
341 |
Q |
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| T |
11989756 |
gagttgggttttgcgtgagggttgttgcagcaagagaaggatttcatgttttagcaagagag |
11989695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 8571097 - 8571053
Alignment:
| Q |
117 |
ggattcaatagaaataaacttcaagtagcaggtcattcttttgga |
161 |
Q |
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| T |
8571097 |
ggattcaatagaaataaacttcaagtagcaggtcattcttttgga |
8571053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 1760 - 1852
Alignment:
| Q |
1 |
tatatgctctagctttaataggatctctccgcgagtggatggtgggactgaacccctcgaattattcgatccttaggtcaagtaccaaatttt |
93 |
Q |
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| T |
1760 |
tatatgctctagctttaataggatctctccgcaagtggatggtgggactgaaccccttgaattattcgatccttaagtcaagtaccaaatttt |
1852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6612472 - 6612564
Alignment:
| Q |
1 |
tatatgctctagctttaataggatctctccgcgagtggatggtgggactgaacccctcgaattattcgatccttaggtcaagtaccaaatttt |
93 |
Q |
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| T |
6612472 |
tatatgctctagctttaataggatctctccgcaagtggatggtgggactgaaccccttgaattattcgatccttaagtcaagtaccaaatttt |
6612564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 6581180 - 6581271
Alignment:
| Q |
2 |
atatgctctagctttaataggatctctccgcgagtggatggtgggactgaacccctcgaattattcgatccttaggtcaagtaccaaatttt |
93 |
Q |
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| T |
6581180 |
atatgctctaactttaataggatccctcagcaaatggatggtgggactgaacccctcagattatgcagtccttaggtcaaataccaagtttt |
6581271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 29448209 - 29448048
Alignment:
| Q |
181 |
cagaggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgtta-tgtttcttcgt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| | || | || ||||||||| ||||| | |||||| | | |
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| T |
29448209 |
cagaggaattcaatacaccggaacaatgttttaacaattaccaacacatagggattcaattttcagtgacagagtgattctcacgtgagagtttctacat |
29448110 |
T |
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| Q |
280 |
gagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagag |
341 |
Q |
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| T |
29448109 |
gagttgggttttgcgtgagggtttttgcagggagagaagggtttcacattttagcaggagag |
29448048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 29455508 - 29455353
Alignment:
| Q |
184 |
aggaattcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgtta-tgtttcttcgtgag |
282 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||| |||| || ||||| ||||| | ||||| ||||||| |
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| T |
29455508 |
aggaattcaatacaccggattaatgttttaacaattacaaacacatagggattcaatttgcagtaac--agagattctcacgtgagagtttc-tcgtgag |
29455412 |
T |
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| Q |
283 |
ttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagag |
341 |
Q |
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|| ||||||| ||| |||| ||| || ||| |||| |||||| |||||||||||||| |
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| T |
29455411 |
ttgggttttgtgtgaaggtttttgcagggagtgaagggtttcacattttagcaagagag |
29455353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 333
Target Start/End: Original strand, 37458270 - 37458412
Alignment:
| Q |
190 |
tcaatacaccggaacaatgttttaacaattacaaatacagagggattcaatatgcactaactgagtgattcacacgtta-tgtttcttcgtgagttaggt |
288 |
Q |
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|||||||||| ||| |||||||||||||||| || | | |||||||||||||||| |||| |||||||||| |||| | | |||| ||||| || || |
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| T |
37458270 |
tcaatacaccagaataatgttttaacaatta--aacaaaaagggattcaatatgcagtaacagagtgattcaaacgtgagagcttctacgtgaattgtgt |
37458367 |
T |
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| Q |
289 |
tttgaatgagggttgttgtagcgagagaagtgtttcatgttttag |
333 |
Q |
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| T |
37458368 |
tttgcaagtcggttgttgcagcaagagaagggtttcatgttttag |
37458412 |
T |
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