View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_high_10 (Length: 315)
Name: NF21506_high_10
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_high_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 33386943 - 33387244
Alignment:
| Q |
14 |
agaggcatatataaacaaattttgaaaagaaactaaaacgtgacattggaaaacttttaaccgggccaatgtacgtgatgcaaaaattggttttattcca |
113 |
Q |
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| T |
33386943 |
agaggcatatataaacaaattttgaaaagaaactaaaacgtgacattggaaaacttttaaccgggccaatgtacgtgatgcaaaaattggttttattcca |
33387042 |
T |
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| Q |
114 |
tatattcagattggtcagatcattcagtatgtgacataggtaagctaccacttcctacataataatgatcgtgttggtcttattactcctctttgtagcc |
213 |
Q |
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| T |
33387043 |
tatattcagattggtcagatcattcagtatgtgacataggtaagctaccacttcctacatattaatgattgtgttggtcttattactcctctttgtagcc |
33387142 |
T |
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| Q |
214 |
tccgccaaccgtcgtggtggtcctttgtcgccttatttatatatattatacgttcatatggcctcactacttacatctgcatcagaaaaccagaggtctc |
313 |
Q |
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| T |
33387143 |
tccgccaaccttcgtggtggtcctttgtcgccttatttatatatattatacgttcatatggcctcgctacttacatctgcatcagaaaaccagaggtctc |
33387242 |
T |
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| Q |
314 |
at |
315 |
Q |
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|| |
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| T |
33387243 |
at |
33387244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 33386079 - 33386107
Alignment:
| Q |
23 |
tataaacaaattttgaaaagaaactaaaa |
51 |
Q |
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| T |
33386079 |
tataaacaaattttgaaaagaaactaaaa |
33386107 |
T |
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