View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_high_18 (Length: 239)
Name: NF21506_high_18
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_high_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 248624 - 248404
Alignment:
| Q |
19 |
tataaattactcgtaagttcgtaacctcggttttcaagtaatgtgagannnnnnnggtataccaaaacaaaattagacaaaattcatcctagtacattct |
118 |
Q |
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| T |
248624 |
tataaattactcgtaagttcgtaacctcggttttcaagtaatgtgagatttttttggtataccaaaacaaaattagacaaaattcatcctagtacattct |
248525 |
T |
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| Q |
119 |
tttctttccttggatccctttcattaagtttaggattgggtgacccttctcttcctcttactcaatatccttatcctacaccaccctcaatcacctcctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
248524 |
tttctttccttggatccctttcattaagtttaggattgggtgacccttctctccctcttactcaatatccttatcctataccaccctcaatcacctcctt |
248425 |
T |
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| Q |
219 |
ttattttaggggaaggggacc |
239 |
Q |
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||||||||||||||||||||| |
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| T |
248424 |
ttattttaggggaaggggacc |
248404 |
T |
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