View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_low_1 (Length: 603)
Name: NF21506_low_1
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 15 - 585
Target Start/End: Complemental strand, 52856729 - 52856159
Alignment:
| Q |
15 |
caaagggaattcagttttctgcagttcttgatgtgtagatcagtaatgaaaatggagttatacatgttttggatgataagaagcttagagttgaaggttc |
114 |
Q |
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| T |
52856729 |
caaagggaattcagttttctgcagttcttgatgtgcagatcagtaatgaaaaaggagttatacatgttttggatgataagaagcttagagttgaaggttc |
52856630 |
T |
|
| Q |
115 |
agattgggctattttgcttctgacagcttcctcgtcgtttgatggtccatttactaatcctgaaaactctaaaaaagatcttgcttccgagtccttgagt |
214 |
Q |
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| T |
52856629 |
agattgggctattttgcttctgacagcttcctcgtcgtttgatggtccatttactaatcctgaaaactctaagaaagatcttacttccgagtccttgagt |
52856530 |
T |
|
| Q |
215 |
aaaatgaagtttgtgaaaagcttaaaatatgatgatatttatgctcgtcacttggatgactatcaaaatctatttcatcgggtctcattgcaactctcta |
314 |
Q |
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| T |
52856529 |
aaaatgaagtttgtgacaagcttaaaatatgatgatatttatgctcgtcacttggatgactatcaaaatctatttcatcgggtctcattgcaactctcta |
52856430 |
T |
|
| Q |
315 |
aaagttcgaagactgctttaggaaaacctattttggacgaagggaaaatggtttcttgtcaaactaacatatctcaattgagaggtggtgatattgttcc |
414 |
Q |
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| T |
52856429 |
aaagttcgaagactgttttaggaaaacctattttggacgaagggaaaatggtttcttgtcaaactaacatatctcaattgagaggtggtgatattgttcc |
52856330 |
T |
|
| Q |
415 |
aacttcatcgagaatcaaatcatttcaaaatgatgaagatccttcctttgtggagcttttgtttcaatacggtagatatctgctaattgcttgttcacgt |
514 |
Q |
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| T |
52856329 |
aacttcatcgagaatcaaatcatttcaaaatgatgaagatccttcctttgtggagcttttgtttcaatacggtagatatctgctaattgcttgttcacgt |
52856230 |
T |
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| Q |
515 |
cccagaactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgtttt |
585 |
Q |
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| T |
52856229 |
cccggaactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgtttt |
52856159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 585
Target Start/End: Complemental strand, 48487533 - 48486971
Alignment:
| Q |
20 |
ggaattcagttttctgcagttcttgatgtgtagatcagtaatgaaaatggagttatacatgttttggatgataagaagcttagagttgaaggttcagatt |
119 |
Q |
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| T |
48487533 |
ggaattcagttttgtgcagttcttgatatgcagattagtaatgacaaaggtgttatacatgttttagacgacaagaagtttagagttgaaggttcagatt |
48487434 |
T |
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| Q |
120 |
gggctattttgcttctgacagcttcctcgtcgtttgatggtccatttactaatcctgaaaactctaaaaaagatcttgcttccgagtccttgagtaaaat |
219 |
Q |
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| T |
48487433 |
gggctattttgcttctgacagcttcctcgtcctttgatggtccatttactaatcctgaagactcaaagaaggatcctactactgagtccttgagtaaaat |
48487334 |
T |
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| Q |
220 |
gaagtttgtgaaaagcttaaaatatgatgatatttatgctcgtcacttggatgactatcaaaatctatttcatcgggtctcattgcaactctctaaaagt |
319 |
Q |
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| T |
48487333 |
gaaatctgcaaaaagcttttcatatgatgatatttacgcacgtcacttggatgactatcagaatctatttcatcgggtctcattgcaactctctaaaagt |
48487234 |
T |
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| Q |
320 |
tcgaagactgctttaggaaaacctattttggacgaagggaaaatggtttcttgtcaaactaacatatctcaattgagaggtggtgatattgttccaactt |
419 |
Q |
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| T |
48487233 |
tccaagacggttttaggaaaacctattttggatgaa---aaattggtttctggtcaaactaacatctctcaattgggaggtgattctgctgttccaactt |
48487137 |
T |
|
| Q |
420 |
catcgagaatcaaatcatttcaaaatgatgaagatccttcctttgtggagcttttgtttcaatacggtagatatctgctaattgcttgttcacgtcccag |
519 |
Q |
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|||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| | |
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| T |
48487136 |
catcgagagtcaattcgtttcaaaatgatgaagatccttcctttgtggaacttttgtttcaatatggtcgatatctgctaattgcttgttcacgtcctgg |
48487037 |
T |
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| Q |
520 |
aactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgtttt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||| |
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| T |
48487036 |
aactcaggtggcaaacctacagggtatatggaacaataaagttgcacctgcatgggagtatgtttt |
48486971 |
T |
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