View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21506_low_12 (Length: 313)
Name: NF21506_low_12
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 182 - 294
Target Start/End: Original strand, 5181476 - 5181588
Alignment:
| Q |
182 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
281 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
|
| Q |
282 |
tgagacttcatct |
294 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
5181576 |
tgagatttcatct |
5181588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 5159249 - 5159360
Alignment:
| Q |
183 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
282 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
|
| Q |
283 |
gagacttcatct |
294 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5159349 |
gagacttcatct |
5159360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
182 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
183 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
244 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
248 |
ataccaatttgtcatctaggattctccaagaatttg |
283 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
| Q |
143 |
gaaaaaatatgttttgtcactctccacataatactcttt |
181 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4843461 |
gaaaaaatatggtttgccactctccacataatactcttt |
4843423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
| Q |
147 |
aaatatgttttgtcactctccacataatactcttt |
181 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
5172102 |
aaatatgttttgccactctccacataatactcttt |
5172136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University