View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_low_16 (Length: 271)
Name: NF21506_low_16
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 38304501 - 38304278
Alignment:
| Q |
16 |
aatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatggcttaaca |
115 |
Q |
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| T |
38304501 |
aatactaaagggcgtgtaccttgggagaagaagccgaatgaaataaacataaatgattattctttatcatctttcataaatgaagatggatggcttaaca |
38304402 |
T |
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| Q |
116 |
atataccaaatatatttctataatttactttacataggctgagttgagatattgatatacacaaataacctgtttggatgaggtatattgaatcaacttc |
215 |
Q |
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| T |
38304401 |
atataccaaatatatttctataatttactttacataggctgagttgagatattgatatacacaaata-------------aggtatattgaatcaacttc |
38304315 |
T |
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| Q |
216 |
tctacttctttgaatgccagctcgttccattattagtttt |
255 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
38304314 |
tcta---ctttgaatgccagctcgttccattattagtttt |
38304278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 38300292 - 38300178
Alignment:
| Q |
15 |
taatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatggcttaac |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38300292 |
taatactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggcttaac |
38300193 |
T |
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| Q |
115 |
aatataccaaatata |
129 |
Q |
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|||||||||| |||| |
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| T |
38300192 |
aatataccaactata |
38300178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 38292710 - 38292614
Alignment:
| Q |
15 |
taatactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatggctt |
111 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38292710 |
taatactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggctt |
38292614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 18745508 - 18745564
Alignment:
| Q |
55 |
gaaataaatataaatgattattctttatcatctttcataaatgaagatggatggctt |
111 |
Q |
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|||||||||||| | || |||||||||||||||||||||||| |||||||||||||| |
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| T |
18745508 |
gaaataaatatacaagaatattctttatcatctttcataaataaagatggatggctt |
18745564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 54497811 - 54497755
Alignment:
| Q |
65 |
taaatgattattctttatcatctttcataaatgaagatggatggcttaacaatatac |
121 |
Q |
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| T |
54497811 |
taaatgaatattctttatcatctttcataaataagaatggatggcttaccaacatac |
54497755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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