View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21506_low_18 (Length: 264)
Name: NF21506_low_18
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_18 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 42921194 - 42921437
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42921194 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
42921293 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42921294 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttttgtgcaacatatctgatttcttgctttccttggagtcctatttgt |
42921393 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42921394 |
tcaactataagtagtttcaatcaaaatttaggtgtcactatatt |
42921437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 22977832 - 22977589
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22977832 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
22977733 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22977732 |
ataaataattagttatcaattatcacaacggggacttgctttttcgtttgttttctgtgcatcatatctgatttcttgctttccttggagtcctatttgt |
22977633 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22977632 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
22977589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 23810570 - 23810813
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23810570 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
23810669 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23810670 |
ataaataattagttatcaattatcacaacggggacttgctttttcgtttgttttctgtgcatcatatctgatttcttgctttccttggagtcctatttgt |
23810769 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23810770 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
23810813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 34324400 - 34324643
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
34324400 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggaaagtattaac |
34324499 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34324500 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttcatttttgtgcatcatatctgatttcttgctttccttggagtcctatttgt |
34324599 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34324600 |
tcaactataagtagtttcaatcaaaatttaggtgtcactatatt |
34324643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 2627118 - 2626971
Alignment:
| Q |
114 |
taacataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2627118 |
taacataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttctgtgcatcatatctgatttcttgctttcctaagagtcctat |
2627019 |
T |
|
| Q |
214 |
ttgttcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627018 |
ttgttcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
2626971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 2627157 - 2627115
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaac |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627157 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaac |
2627115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 45288792 - 45288550
Alignment:
| Q |
19 |
tgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45288792 |
tgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaaca |
45288693 |
T |
|
| Q |
119 |
taaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45288692 |
taaataattagttatcaattatcacaacagggacttgctttttcgtttgatttttgtgcatcatatccgatttcttgctttccttggagtcctatttgtt |
45288593 |
T |
|
| Q |
219 |
caaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45288592 |
caactataagtaatttcaatcaaaatttaggtgtcactatatt |
45288550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 3752408 - 3752651
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3752408 |
gtgatgacacaattagaatgaataatttttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
3752507 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
3752508 |
ataaataattagttatcaattatcacaacagggactttctttttcgtttgatttttgtacatcatatctaatttcttgctttccttggagtcctatttgt |
3752607 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3752608 |
tcaactataagtagtttcaatcaaaatttaggtgtcactatatt |
3752651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 19251137 - 19251382
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19251137 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
19251236 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttccta-----ggagtccta |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19251237 |
ataaataattagttatcatctatcacaacagggacttgctttttcgtttgattt---tacatcatatctgatttcttgctttcctttcctcggagtccta |
19251333 |
T |
|
| Q |
213 |
tttgttcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19251334 |
tttgttgaactataagtagtttcaatcaaaatttaggtgtcactatatt |
19251382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 19324321 - 19324566
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19324321 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
19324420 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttccta-----ggagtccta |
212 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19324421 |
ataaataattagttatcatctatcacaacagggacttgctttttcgtttgattt---tacatcatatctgatttcttgctttcctttcctcggagtccta |
19324517 |
T |
|
| Q |
213 |
tttgttcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19324518 |
tttgttgaactataagtagtttcaatcaaaatttaggtgtcactatatt |
19324566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 47389551 - 47389308
Alignment:
| Q |
18 |
gtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtggcgggttcaagaataaccaaggcaagtattaac |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47389551 |
gtgatgactcaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgggttcaagaataaccaaggcaagtattaac |
47389452 |
T |
|
| Q |
118 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttatgtgcatcatatctgatttcttgctttcctaggagtcctatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| || |||||||||||||| |
|
|
| T |
47389451 |
ataaataattagttatcaattatcacaacagggacttgctttttcgtttgatttttgtgcatcacatttgatttcttgcttttcttggagtcctatttgt |
47389352 |
T |
|
| Q |
218 |
tcaaatataagtagtttcaatcaaaatttaggtgtcactatatt |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47389351 |
tcaactataagtagtttcaatcaaaatttaggtgtcactatatt |
47389308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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