View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21506_low_19 (Length: 250)
Name: NF21506_low_19
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 7082650 - 7082883
Alignment:
| Q |
1 |
aaggctaagaattcagaagtttagaaaaagagatagtttaaggtatcaaaattattaatattttttgaattatgtgttatttggtatgtaatgatgttag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
7082650 |
aaggctaagaattcagaagtttagaaaaagagatagtttaaggtatcaaaattattagtattttttgaattatgtgttatttggtgtgtaatg---ttag |
7082746 |
T |
|
| Q |
101 |
ttaacttctgtcttgtaactaaacaaataaaaaatggaaggatattgaggaaactaatttgaccataatgattggttaaacttatgataagtgacagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7082747 |
ttaacttctgtcttgtaactaaacaaataaaaaatggaaggatattgaggaaactaatttgaccataatgattggttaaacttatgataagtgacagaaa |
7082846 |
T |
|
| Q |
201 |
taattgtgttgagaccatatcatatagtatacacttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7082847 |
taattgtgttgagaccatatcatatagtaaacacttc |
7082883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University