View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_low_3 (Length: 547)
Name: NF21506_low_3
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 43879453 - 43879685
Alignment:
| Q |
15 |
tgaattaaatttataatgtcattcctctataagaattttttccatcttgaaagttttatttgaatctctggtttcaaatcttattaaggtgtttgataag |
114 |
Q |
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| T |
43879453 |
tgaattgaatttataatgtcattcatctataagaattttttccatcttgaaagctttatttgaatctatagtttcaaatcttattaaggtgtttgataag |
43879552 |
T |
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| Q |
115 |
gtgagagaacacaaatgaaatgaagtcttaaaagatcttaaatttgtagcatatggcaaattaaaagtaattaattcaatgcgtacaaatacagggagag |
214 |
Q |
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| T |
43879553 |
gtgagagaacacaaatgaaatgaagtcttaaaagatcttaaatttgtagcatagggcaaaataaaagtaattaattcaatgcgtacaaatacagggagag |
43879652 |
T |
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| Q |
215 |
tatctcaactttattctgggcataaagttccaa |
247 |
Q |
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| T |
43879653 |
tatctcaactttattctgggcataaagttccaa |
43879685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 43879701 - 43879774
Alignment:
| Q |
306 |
gtcgtgtcgtgtgcatatttgaaatagaaatagaggcaccttcttaattggttattgtttcagtatggcatgtg |
379 |
Q |
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| T |
43879701 |
gtcgtgtcgtgtgcatatttgaaatagaaatagaggcaccttcttaattggttattgtttcagtatggcatgtg |
43879774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 43879856 - 43879935
Alignment:
| Q |
434 |
ttaactaaatactcattcaatcagttagc----tcaatcaatcgagctacacatcctcctactaagaaggttccttgaga |
509 |
Q |
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| T |
43879856 |
ttaactacatactcattcaatcagttagctagctcaatcaatcgagctgcacatcctcctactaacaaggttccttgaga |
43879935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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