View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21506_low_4 (Length: 479)

Name: NF21506_low_4
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21506_low_4
NF21506_low_4
[»] chr1 (3 HSPs)
chr1 (108-299)||(7743985-7744172)
chr1 (335-464)||(7743860-7743993)
chr1 (39-83)||(7744197-7744241)
[»] scaffold0132 (1 HSPs)
scaffold0132 (231-386)||(23836-23991)
[»] scaffold0211 (1 HSPs)
scaffold0211 (231-384)||(14516-14669)
[»] chr6 (1 HSPs)
chr6 (230-356)||(19483827-19483953)
[»] scaffold0018 (1 HSPs)
scaffold0018 (225-386)||(5398-5559)
[»] chr2 (2 HSPs)
chr2 (225-386)||(24813454-24813615)
chr2 (330-386)||(19311790-19311846)
[»] chr8 (2 HSPs)
chr8 (231-386)||(22163374-22163529)
chr8 (231-386)||(23784632-23784787)
[»] scaffold0387 (1 HSPs)
scaffold0387 (231-384)||(8480-8633)
[»] chr3 (1 HSPs)
chr3 (391-449)||(40865406-40865468)
[»] scaffold0738 (1 HSPs)
scaffold0738 (231-272)||(3613-3654)
[»] scaffold0547 (1 HSPs)
scaffold0547 (330-386)||(2093-2149)
[»] chr4 (1 HSPs)
chr4 (330-386)||(16818148-16818204)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 108 - 299
Target Start/End: Complemental strand, 7744172 - 7743985
Alignment:
Q  108 taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7744172 taagaagcaatactcagaagataatgattttcatagatatgttcagaagcaataaatagagtacaacattttagcaagataattttttacagaagaaact 7744073  T
Q  208 aaacaagcaataacaataatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttct 299  Q
    |||||| ||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  7744072 aaacaaacaataacaataatagatgtgcaactaag----ggcttgtttagaggctgcttccatcaagaatttcatgttatctgagagcttct 7743985  T

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Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 335 - 464
Target Start/End: Complemental strand, 7743993 - 7743860
Alignment:
Q  335 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctcta----catgcatgaca 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    | |||||||||    
T  7743993 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctaccttcctgcatgaca 7743894  T
Q  431 aatacattttgtaaagaaatggagactccaattt 464  Q
    ||||||||||||||| ||||||||||||||||||    
T  7743893 aatacattttgtaaataaatggagactccaattt 7743860  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 7744241 - 7744197
Alignment:
Q  39 gagaattcattcagaaggtgagaacaaaaacatttgtaacggagc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  7744241 gagaattcattcagaaggtgagaacaaaaacatttgtaacggagc 7744197  T

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Target: scaffold0132 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 386
Target Start/End: Complemental strand, 23991 - 23836
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 330  Q
    ||||||||||||| | ||||||||||||||||  |||||||||  ||||||  |  ||||| |||||||||| ||| ||||||||||| |    ||||||    
T  23991 tgtgcaactaaggttgggcttgtttagaggctacttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcttgcttagacacaacatc 23892  T
Q  331 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    ||||||| ||||||||||||| |||| ||| ||||  |||||||| || |||||||    
T  23891 ttccagaacttctgtcttctgtttcatcttctgaagttcttcatcttttgcttgag 23836  T

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Target: scaffold0211 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 14669 - 14516
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 330  Q
    ||||||||||||| | ||||||||||||||||| |||||||||  ||||||  |  ||||| |||||||||| ||| ||||| ||||| |    ||||||    
T  14669 tgtgcaactaaggttgggcttgtttagaggctgcttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcctgcttagacacaacatc 14570  T
Q  331 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg 384  Q
    ||||||| | ||||||||||| |||| ||| || |  |||||||| ||||||||    
T  14569 ttccagaacctctgtcttctgtttcatcttctgtagttcttcatctttagcttg 14516  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 19483827 - 19483953
Alignment:
Q  230 atgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacat 329  Q
    |||||||||||||| | ||||||||||||||||| | |||||||  |||| |  |  ||||| |||||||||||||| ||||||| ||| | |  |||||    
T  19483827 atgtgcaactaaggttgggcttgtttagaggctgctgccatcaaatattttacatgttctgatagtttcttcaactcttctgctttcttagaaacaacat 19483926  T
Q  330 cttccagagcttctgtcttctgcttca 356  Q
    |||||||| | ||||||||||| ||||    
T  19483927 cttccagaacctctgtcttctgtttca 19483953  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 5559 - 5398
Alignment:
Q  225 aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt 324  Q
    ||||| ||||||||||||| | ||||||||||||||||  |||||||||| ||| ||  |  ||||| || |||||||  || |||| ||||||||        
T  5559 aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac 5460  T
Q  325 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||| |||||||| ||||||||||||| |||| ||| ||||  | |||||| ||||||||||    
T  5459 aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag 5398  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 24813615 - 24813454
Alignment:
Q  225 aatagatgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagt 324  Q
    ||||| ||||||||||||| | ||||||||||||||||  |||||||||| ||| ||  |  ||||| || |||||||  || |||| ||||||||        
T  24813615 aataggtgtgcaactaaggttgggcttgtttagaggctacttccatcaagtattacacttgttctgatagcttcttcatttcttctgtttgctttgacac 24813516  T
Q  325 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||| |||||||| ||||||||||||| |||| ||| ||||  | |||||| ||||||||||    
T  24813515 aacagcttccagatcttctgtcttctgtttcatcttctgaagtttttcatctttagcttgag 24813454  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 19311846 - 19311790
Alignment:
Q  330 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  19311846 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 19311790  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 386
Target Start/End: Complemental strand, 22163529 - 22163374
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 330  Q
    ||||||||||||| ||||||||||||||||||  |||||||||  ||||||  |  ||||| | |  |||||  || |||| |||||| | |  |||| |    
T  22163529 tgtgcaactaaggtttggcttgtttagaggctacttccatcaaatatttcacttgttctgataatagcttcatgtcttctgtttgcttagaaacaacagc 22163430  T
Q  331 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  22163429 ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 22163374  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 386
Target Start/End: Original strand, 23784632 - 23784787
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 330  Q
    ||||||||||||| |||||||| |||||||||  |||||||||| ||||||  |  ||||| |    |||||  || |||| |||||| | |  |||| |    
T  23784632 tgtgcaactaaggtttggcttgattagaggctacttccatcaagtatttcacttgttctgataacagcttcatgtcttctgtttgcttagaaacaacagc 23784731  T
Q  331 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  23784732 ttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 23784787  T

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Target: scaffold0387 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 8480 - 8633
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatc 330  Q
    ||||| ||||||| | ||||||||||| | ||| |||||||||  |||| |  |  ||||| |||||||||| ||| ||||||||||| | |  ||||||    
T  8480 tgtgctactaaggttgggcttgtttagtgactgcttccatcaaatattttacttgttctgatagtttcttcatctcttctgcttgcttagaaacaacatc 8579  T
Q  331 ttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg 384  Q
    ||||||| | ||||||||||| |||| ||| ||||  |||||||| || |||||    
T  8580 ttccagaacctctgtcttctgtttcatcttctgaagttcttcatcttttgcttg 8633  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 40865468 - 40865406
Alignment:
Q  391 caaatgtcttctttttcacaacttctctacat----gcatgacaaatacattttgtaaagaaa 449  Q
    |||||| ||||||||||||||||||||||| |    |||||||||||||||||||||||||||    
T  40865468 caaatgccttctttttcacaacttctctaccttcctgcatgacaaatacattttgtaaagaaa 40865406  T

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Target: scaffold0738 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0738
Description:

Target: scaffold0738; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 3654 - 3613
Alignment:
Q  231 tgtgcaactaagggttggcttgtttagaggctgtttccatca 272  Q
    ||||||||||||| ||||||||||||||||||  ||||||||    
T  3654 tgtgcaactaaggtttggcttgtttagaggctacttccatca 3613  T

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Target: scaffold0547 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 2093 - 2149
Alignment:
Q  330 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  2093 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 2149  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 16818204 - 16818148
Alignment:
Q  330 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 386  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  16818204 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 16818148  T

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