View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21506_low_6 (Length: 418)

Name: NF21506_low_6
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21506_low_6
NF21506_low_6
[»] chr3 (4 HSPs)
chr3 (183-402)||(40417459-40417679)
chr3 (11-80)||(40417286-40417355)
chr3 (315-390)||(45818038-45818112)
chr3 (346-402)||(20525556-20525612)
[»] chr6 (3 HSPs)
chr6 (181-380)||(4087038-4087237)
chr6 (320-390)||(16599323-16599393)
chr6 (319-390)||(128725-128796)
[»] scaffold0377 (2 HSPs)
scaffold0377 (319-402)||(11909-11992)
scaffold0377 (184-239)||(11731-11786)
[»] chr7 (4 HSPs)
chr7 (319-402)||(42078110-42078193)
chr7 (184-277)||(42077930-42078023)
chr7 (315-390)||(28109212-28109287)
chr7 (319-401)||(37970423-37970505)
[»] chr5 (4 HSPs)
chr5 (315-401)||(26449042-26449128)
chr5 (345-400)||(3522516-3522571)
chr5 (345-402)||(13416383-13416440)
chr5 (344-400)||(9198024-9198080)
[»] chr2 (3 HSPs)
chr2 (319-402)||(29463198-29463281)
chr2 (345-401)||(13527088-13527144)
chr2 (345-402)||(19427147-19427204)
[»] chr1 (7 HSPs)
chr1 (345-402)||(42471343-42471404)
chr1 (346-402)||(44108879-44108935)
chr1 (315-402)||(19806275-19806362)
chr1 (345-390)||(7902744-7902789)
chr1 (345-390)||(7906193-7906238)
chr1 (345-390)||(8002117-8002162)
chr1 (345-401)||(47142973-47143029)
[»] chr4 (5 HSPs)
chr4 (318-401)||(26619997-26620080)
chr4 (183-248)||(26620198-26620263)
chr4 (338-402)||(19180692-19180756)
chr4 (319-387)||(14518536-14518604)
chr4 (346-386)||(29694240-29694280)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 183 - 402
Target Start/End: Original strand, 40417459 - 40417679
Alignment:
Q  183 gttgggttaaaattcatttcgattgcatgataatgaaattgattttatttctatgatcgtaaatgg--tgacacacaagatgagcagaaaattaaaagaa 280  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||| |  ||||||||||||||||||| ||||||||| ||    
T  40417459 gttgggttaaaattaatttcgattgcatgttaatgaaattgatttcatttctatgattgtaaatagaatgacacacaagatgagcagtaaattaaaataa 40417558  T
Q  281 aaataaatatttattttaatttgatttctggcagtttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatt 380  Q
    ||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40417559 aaacagatatatattttaatttgatttctg-cagtttcttatcatgtcaataacaaatatgtgtcaaacacatgatatgataaaataatgctatcatatt 40417657  T
Q  381 tcttatcatgcgtgcaccaaac 402  Q
    ||||||||||||||||||||||    
T  40417658 tcttatcatgcgtgcaccaaac 40417679  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 40417286 - 40417355
Alignment:
Q  11 aatgaaatggaggacttgattaattaattgatggaatgaaatcaattacaaggattgaaatagaatggag 80  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40417286 aatggaatggaggaattgattaattaattgatggaatgaaatcaattacaaggattgaaatagaatggag 40417355  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 45818112 - 45818038
Alignment:
Q  315 tttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    |||||||||| ||||||||||||||||   |||||| |||||| |||||||||||| |||| | ||||||||||||    
T  45818112 tttcttatcacgtcaataacaaatgtgcaccaaacatatgataggataaaataatgttatc-tctttcttatcatg 45818038  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 20525556 - 20525612
Alignment:
Q  346 aaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    ||||| ||||||||||||||||||  |||||| |||||||||||   ||||||||||    
T  20525556 aaacatatgatatgataaaataataatatcatctttcttatcatatctgcaccaaac 20525612  T

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Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 181 - 380
Target Start/End: Complemental strand, 4087237 - 4087038
Alignment:
Q  181 gcgttgggttaaaattcatttcgattgcatgataatgaaattgattttatttctatgatcgtaaatggtgacacacaagatgagcagaaaattaaaagaa 280  Q
    |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    ||||||||||||||||||||||||| ||    
T  4087237 gcgttgggttaaaattaatttcgattgcatgttaatggaattgattttatttctatgattgtaaatggaatgacacaagatgagcagaaaattaaaaaaa 4087138  T
Q  281 aa-ataaatatttattttaatttgatttctggcagtttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatat 379  Q
    || ||| || | | ||||| || || ||||||  ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||    
T  4087137 aatatagatctgtgtttta-ttcgagttctggtcgtttcttatcatgtcaatagcaattgtgtgtcaaacacatgataggataaaataatgctattatat 4087039  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 16599323 - 16599393
Alignment:
Q  320 tatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    ||||||||||||| ||| ||||   |||||||||||||  || ||||||||||||||| ||||||||||||    
T  16599323 tatcatgtcaatatcaagtgtgcaccaaacacatgatagaattaaataatgctatcatctttcttatcatg 16599393  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 128796 - 128725
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    |||||||||||||||||| |||   ||||||| ||||||  ||||||||||| |||||| ||| ||||||||    
T  128796 ttatcatgtcaataacaagtgtccatcaaacaaatgatagaataaaataatgttatcattttttttatcatg 128725  T

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Target: scaffold0377 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 11909 - 11992
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    |||||||||||||| ||||||||  ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  11909 ttatcatgtcaatagcaaatgtgcatcaaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaaac 11992  T

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Target: scaffold0377; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 11731 - 11786
Alignment:
Q  184 ttgggttaaaattcatttcgattgcatgataatgaaattgattttatttctatgat 239  Q
    ||||||||||||| |||||||||| ||| ||||  |||||||||||||||||||||    
T  11731 ttgggttaaaattaatttcgattgtatgttaattgaattgattttatttctatgat 11786  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 42078110 - 42078193
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    |||||||||||||| ||||||||  ||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42078110 ttatcatgtcaatagcaaatgtgcatcaaaaatatgatatgataaaataatgttatcatatttcttatcatgcgtgcaccaaac 42078193  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 42077930 - 42078023
Alignment:
Q  184 ttgggttaaaattcatttcgattgcatgataatgaaattgattttatttctatgatcgtaaatggtgacacacaagatgagcagaaaattaaaa 277  Q
    ||||||||||||| |||||||||||||| ||||  ||||||||||||||||||||| || |||||    | |||||||||| ||||||||||||    
T  42077930 ttgggttaaaattaatttcgattgcatgttaattgaattgattttatttctatgattgtcaatggaatgatacaagatgagtagaaaattaaaa 42078023  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 28109212 - 28109287
Alignment:
Q  315 tttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    ||||||||||| |||||| ||| ||||   |||||| | |||||||||||||||| |||||| |||||||||||||    
T  28109212 tttcttatcatatcaatagcaagtgtgcaccaaacatacgatatgataaaataattctatcacatttcttatcatg 28109287  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 37970423 - 37970505
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaa 401  Q
    |||||||||| ||| ||| ||||   ||||| ||||||| ||||||||||||||||||| ||| |||||| | ||||||||||    
T  37970423 ttatcatgtcgatagcaagtgtgcaccaaacgcatgataggataaaataatgctatcatcttttttatcaagtgtgcaccaaa 37970505  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 26449042 - 26449128
Alignment:
Q  315 tttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaa 401  Q
    |||||||||||||||||||||||||||   ||||||||||||| |||||||||||| |||||| |||||||||||  ||||||||||    
T  26449042 tttcttatcatgtcaataacaaatgtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaa 26449128  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 3522571 - 3522516
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 400  Q
    |||||||| |||| |||||||||||| |||||| ||| ||||||||||||||||||    
T  3522571 caaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcaccaa 3522516  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 13416440 - 13416383
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    ||||||||||||   |||||||||||||||||| |||||||||||  |||||||||||    
T  13416440 caaacacatgatgaaataaaataatgctatcatctttcttatcatatgtgcaccaaac 13416383  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Original strand, 9198024 - 9198080
Alignment:
Q  344 tcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaa 400  Q
    |||||||||| |||||||||||||||  |||||| ||| |||||||| |||||||||    
T  9198024 tcaaacacataatatgataaaataatattatcatcttttttatcatgtgtgcaccaa 9198080  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 29463198 - 29463281
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    |||||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||  || ||||||||    
T  29463198 ttatcacgtcaataacaagtgtgtatcaaacatatgatatgataaaataatgctatcatctttcttatcatatgtacaccaaac 29463281  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 13527144 - 13527088
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaa 401  Q
    |||||| |||||| |||||||||||| ||||||||||||||| ||| ||||| ||||    
T  13527144 caaacatatgataggataaaataatgttatcatatttcttattatgtgtgcatcaaa 13527088  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 19427147 - 19427204
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    ||||||||  ||||||||| ||||||||||||||||| |||||||   ||||||||||    
T  19427147 caaacacaaaatatgataacataatgctatcatatttattatcatatatgcaccaaac 19427204  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 42471404 - 42471343
Alignment:
Q  345 caaacacatgatatgata----aaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||    
T  42471404 caaacacatgatatgatatgataaataatgctatcatatttcttatcatgtgtgcaccaaac 42471343  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 44108879 - 44108935
Alignment:
Q  346 aaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    |||||||| ||||||||||||||||||||||| ||| |||||||| |||| ||||||    
T  44108879 aaacacataatatgataaaataatgctatcatgtttattatcatgtgtgccccaaac 44108935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 402
Target Start/End: Complemental strand, 19806362 - 19806275
Alignment:
Q  315 tttcttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    |||||| ||||| ||||||||| ||||   |||||||  ||||| |||||||||| |||||||||||||||||| | | |||||||||    
T  19806362 tttcttttcatgacaataacaagtgtgcaccaaacactagatataataaaataatactatcatatttcttatcacgtgcgcaccaaac 19806275  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 7902744 - 7902789
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    |||||| ||||||||||||||||||| |||| ||||| ||||||||    
T  7902744 caaacaaatgatatgataaaataatgttatcgtatttattatcatg 7902789  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 7906193 - 7906238
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    |||||| ||||||||||||||||||| |||| ||||| ||||||||    
T  7906193 caaacaaatgatatgataaaataatgttatcgtatttattatcatg 7906238  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 8002162 - 8002117
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatg 390  Q
    |||||||||||||||||||||||||| |||| || || ||||||||    
T  8002162 caaacacatgatatgataaaataatgttatcctacttattatcatg 8002117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 47143029 - 47142973
Alignment:
Q  345 caaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaa 401  Q
    |||||| |||||| |||||||||||| ||||||  || |||||||| ||||||||||    
T  47143029 caaacatatgataagataaaataatgatatcatgatttttatcatgtgtgcaccaaa 47142973  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 26620080 - 26619997
Alignment:
Q  318 cttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaa 401  Q
    |||||||||| |||||||| |||||  || |  ||||||| ||||||||||||||||||||||| ||||||||| |||| ||||    
T  26620080 cttatcatgttaataacaattgtgtaccagatgcatgataagataaaataatgctatcatattttttatcatgcatgcatcaaa 26619997  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 26620263 - 26620198
Alignment:
Q  183 gttgggttaaaattcatttcgattgcatgataatgaaattgattttatttctatgatcgtaaatgg 248  Q
    |||||||||||||  |||||||||||||| ||||| ||||||||||| |||||| || ||||||||    
T  26620263 gttgggttaaaatatatttcgattgcatgttaatggaattgattttacttctattattgtaaatgg 26620198  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 19180756 - 19180692
Alignment:
Q  338 tgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcaccaaac 402  Q
    ||||| |||||||||||| ||||||||  |||||||||| | ||||||||||||||| |||||||    
T  19180756 tgtgtatcaaacacatgaaatgataaagcaatgctatcaaacttcttatcatgcgtgaaccaaac 19180692  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 14518536 - 14518604
Alignment:
Q  319 ttatcatgtcaataacaaatgtgtgtcaaacacatgatatgataaaataatgctatcatatttcttatc 387  Q
    ||||||||| |||||||| ||||   |||||| ||||||||||||||||||  |||||| |||||||||    
T  14518536 ttatcatgtgaataacaagtgtgcaccaaacatatgatatgataaaataatattatcatctttcttatc 14518604  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 29694240 - 29694280
Alignment:
Q  346 aaacacatgatatgataaaataatgctatcatatttcttat 386  Q
    ||||||||||||  ||||||||||| |||||||||||||||    
T  29694240 aaacacatgataatataaaataatgttatcatatttcttat 29694280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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