View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_low_8 (Length: 339)
Name: NF21506_low_8
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 3041030 - 3041345
Alignment:
| Q |
16 |
atatatattttgcttgataatatatcttgtgccctaaatattttgcatgcatatccaaaaatcgtgccacaaataataagacttgaaaatgaaatacaag |
115 |
Q |
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| T |
3041030 |
atatatattttgcttaataatatatcttgtgccctaaatattttgcatgcatatccaaaaatcgtgccacaaataataagacttgaaaatgaaatacaag |
3041129 |
T |
|
| Q |
116 |
aa-aagnnnnnnnntgtaactcaccaattccacaacaaccaaagagcttctccaaagccaaagctaactccaagtatcccttatgcaaaccaagatcaat |
214 |
Q |
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| T |
3041130 |
aagaagaaaaaaaatgtaactcaccaattccacaacaaccaaagagcttctccaaagccaaagctaactccaagtatcccttatgcaaaccaagatcaat |
3041229 |
T |
|
| Q |
215 |
cttacgcaagtaaggagctccatccatgctaaccttcatgtacatttttgaaccttcattcatgttcttcttccggtacgaacacaccggaggccatccc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3041230 |
cttacgcaagtaaggagctccatccatgctaaccttcatgtacatttttgaaccttcattcatattcttcttccggtacgaacacaccggaggccatccc |
3041329 |
T |
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| Q |
315 |
acaacttgattcttct |
330 |
Q |
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|||||||||||||||| |
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| T |
3041330 |
acaacttgattcttct |
3041345 |
T |
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