View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21506_low_9 (Length: 325)
Name: NF21506_low_9
Description: NF21506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21506_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 2747133 - 2747036
Alignment:
| Q |
18 |
attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
115 |
Q |
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| T |
2747133 |
attatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
2747036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 2754915 - 2754835
Alignment:
| Q |
35 |
caatcaaaattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
115 |
Q |
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| T |
2754915 |
caatcaaaattaagatttctgttcatggtttcaggttggcacacatatttttggattgctttcattcctgtcattgtaagt |
2754835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 2747017 - 2746934
Alignment:
| Q |
165 |
tgctttaaatagaataggtcatagatctttatcgaacgacctgaactagtctaa--tatgtgcatgcatataaatgtaaatttt |
246 |
Q |
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| T |
2747017 |
tgctttaaatagaataggtcatagatctttgtcgaaccacctgaactattataatctatgtgcatgcatataaatgtaaatttt |
2746934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 27383629 - 27383556
Alignment:
| Q |
42 |
aattaagatttatgtttattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
115 |
Q |
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| T |
27383629 |
aattaagatgtttgtgtattgttccagattggcacacatatttttggtttgctttcattcatgtcattgtaagt |
27383556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 55323178 - 55323230
Alignment:
| Q |
63 |
tttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
115 |
Q |
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||||||||||||| ||||| || ||| |||||||| ||||||| ||||||||| |
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| T |
55323178 |
tttcaggttggcatacatatttctggattgctttcgttcctgttattgtaagt |
55323230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 1094688 - 1094745
Alignment:
| Q |
58 |
tattgtttcaggttggcacacatacttttgggttgctttcattcctgtcattgtaagt |
115 |
Q |
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| T |
1094688 |
tattgttccagattggcacgcatatttttggtttgcattcattcatgtcattgtaagt |
1094745 |
T |
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